6JK2

Crystal structure of a mini fungal lectin, PhoSL


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2830.2M Ammonium sulfate, 30% w/v Polyethylene glycol 8000
Crystal Properties
Matthews coefficientSolvent content
2.2144.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.475α = 90
b = 42.475β = 90
c = 37.704γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2018-09-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE TPS 05A1.7NSRRCTPS 05A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.063099.30.0360.99777.8721.217498
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.061.196.20.2130.99314.4119.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.0621.251648789598.960.136950.135770.15798RANDOM17.174
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.19-0.09-0.190.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.642
r_dihedral_angle_4_deg31.267
r_dihedral_angle_3_deg8.25
r_dihedral_angle_1_deg7.555
r_long_range_B_refined2.811
r_long_range_B_other2.478
r_scangle_other2.45
r_scbond_it1.941
r_scbond_other1.889
r_rigid_bond_restr1.722
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.642
r_dihedral_angle_4_deg31.267
r_dihedral_angle_3_deg8.25
r_dihedral_angle_1_deg7.555
r_long_range_B_refined2.811
r_long_range_B_other2.478
r_scangle_other2.45
r_scbond_it1.941
r_scbond_other1.889
r_rigid_bond_restr1.722
r_angle_refined_deg1.623
r_angle_other_deg1.561
r_mcangle_it1.462
r_mcangle_other1.449
r_mcbond_it1.032
r_mcbond_other0.998
r_chiral_restr0.081
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms314
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms10

Software

Software
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
AutoSolphasing