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Crystal Structure Of Fab S40 In Complex With Influenza Hemagglutinin, HA1 subunit.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W9D 3W9D, 3HC4, 3GBN experimental model PDB 3HC4 3W9D, 3HC4, 3GBN experimental model PDB 3GBN 3W9D, 3HC4, 3GBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 8%(w/v) PEG 6000, 1N NaOH, 15% MPD, 0.1 M Na HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.97 75.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.395 α = 90 b = 133.64 β = 110.47 c = 133.136 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 94 CCD RAYONIX MX-225 2016-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 25 99.6 0.096 17.3 4.6 34636
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.47 100 0.645 2.4 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3W9D, 3HC4, 3GBN 3.35 25 34487 1826 76.64 0.23227 0.22987 0.27452 0.2867 RANDOM 173.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.81 -3.04 22.97 -11.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.414 r_long_range_B_refined 23.722 r_long_range_B_other 23.722 r_dihedral_angle_4_deg 18.69 r_dihedral_angle_3_deg 18.072 r_mcangle_other 17.953 r_mcangle_it 17.949 r_scangle_other 16.976 r_mcbond_it 11.602 r_mcbond_other 11.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.414 r_long_range_B_refined 23.722 r_long_range_B_other 23.722 r_dihedral_angle_4_deg 18.69 r_dihedral_angle_3_deg 18.072 r_mcangle_other 17.953 r_mcangle_it 17.949 r_scangle_other 16.976 r_mcbond_it 11.602 r_mcbond_other 11.577 r_scbond_it 10.678 r_scbond_other 10.678 r_dihedral_angle_1_deg 8.561 r_angle_refined_deg 1.494 r_angle_other_deg 0.977 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11100 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling MOLREP phasing