Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 1 mM [U-99% 13C; U-99% 15N] scavenger receptor BI (SR-BI), 5.0 w/v [U-2H] LPPG, 0.02 w/v sodium azide | 90% H2O/10% D2O | 0 | 6.8 | 1 atm | 313 | Bruker AVANCE 600 |
| 2 | 3D 1H-13C NOESY aliphatic | 1 mM [U-99% 13C; U-99% 15N] scavenger receptor BI (SR-BI), 5.0 w/v [U-2H] LPPG, 0.02 w/v sodium azide | 90% H2O/10% D2O | 0 | 6.8 | 1 atm | 313 | Bruker AVANCE 600 |
| 3 | 3D 1H-13C NOESY aromatic | 1 mM [U-99% 13C; U-99% 15N] scavenger receptor BI (SR-BI), 5.0 w/v [U-2H] LPPG, 0.02 w/v sodium azide | 90% H2O/10% D2O | 0 | 6.8 | 1 atm | 313 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 500 |
| 2 | Bruker | AVANCE | 600 |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | |
| Conformers Calculated Total Number | |
| Conformers Submitted Total Number | 20 |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | XEASY | Bartels et al. | |
| 4 | peak picking | XEASY | Bartels et al. | |
| 5 | collection | TopSpin | Bruker Biospin | |
| 6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 7 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
