5KTF | pdb_00005ktf

Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Scavenger receptor class B member 1	amide binding amyloid-beta binding binding peptide binding apolipoprotein binding protein binding lipid binding lipopolysaccharide binding carbohydrate derivative binding apolipoprotein A-I binding lipoprotein particle binding protein-containing complex binding protein-lipid complex binding low-density lipoprotein particle binding amide binding amyloid-beta binding binding peptide binding apolipoprotein binding protein binding lipid binding lipopolysaccharide binding carbohydrate derivative binding apolipoprotein A-I binding lipoprotein particle binding protein-containing complex binding protein-lipid complex binding low-density lipoprotein particle binding molecular transducer activity pattern recognition receptor activity signaling receptor activity lipopolysaccharide immune receptor activity high-density lipoprotein particle binding lipoprotein particle receptor activity cargo receptor activity high-density lipoprotein particle receptor activity	biological process involved in interspecies interaction between organisms response to stimulus detection of external biotic stimulus response to lipid response to other organism detection of lipopolysaccharide response to oxygen-containing compound response to external stimulus detection of molecule of bacterial origin detection of biotic stimulus response to lipopolysaccharide response to biotic stimulus detection of stimulus response to bacterium response to chemical biological process involved in interspecies interaction between organisms response to stimulus detection of external biotic stimulus response to lipid response to other organism detection of lipopolysaccharide response to oxygen-containing compound response to external stimulus detection of molecule of bacterial origin detection of biotic stimulus response to lipopolysaccharide response to biotic stimulus detection of stimulus response to bacterium response to chemical detection of chemical stimulus response to external biotic stimulus response to molecule of bacterial origin cell population proliferation endothelial cell proliferation cellular process epithelial cell proliferation sterol catabolic process alcohol catabolic process catabolic process lipid catabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process primary metabolic process cholesterol catabolic process secondary alcohol metabolic process steroid catabolic process small molecule metabolic process metabolic process small molecule catabolic process lipid metabolic process import into cell transport establishment of localization vesicle-mediated transport phagocytosis, recognition localization phagocytosis cell recognition apoptotic cell clearance recognition of apoptotic cell endocytosis macromolecule localization reverse cholesterol transport lipid localization cholesterol transport lipid transport sterol transport organic hydroxy compound transport cellular response to stimulus positive regulation of cell communication nitric oxide mediated signal transduction regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling regulation of nitric oxide mediated signal transduction biological regulation positive regulation of intracellular signal transduction positive regulation of nitric oxide mediated signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling phospholipid transport organophosphate ester transport chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis endothelial cell migration blood vessel endothelial cell migration cell migration cell motility sterol homeostasis cholesterol homeostasis lipoprotein particle mediated signaling cellular response to high density lipoprotein particle stimulus high density lipoprotein particle mediated signaling cellular response to lipoprotein particle stimulus neutral lipid metabolic process neutral lipid biosynthetic process regulation of triglyceride metabolic process positive regulation of triglyceride metabolic process regulation of lipid metabolic process lipid biosynthetic process acylglycerol biosynthetic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of biosynthetic process triglyceride metabolic process triglyceride biosynthetic process positive regulation of lipid metabolic process regulation of biosynthetic process regulation of triglyceride biosynthetic process positive regulation of triglyceride biosynthetic process biosynthetic process glycerolipid biosynthetic process positive regulation of lipid biosynthetic process glycerolipid metabolic process regulation of lipid biosynthetic process acylglycerol metabolic process regulation of metabolic process transmembrane transport vitamin transport vitamin transmembrane transport regulation of tube diameter multicellular organismal process system process regulation of tube size circulatory system process vascular process in circulatory system blood vessel diameter maintenance regulation of biological quality vasodilation blood circulation regulation of anatomical structure size cholesterol storage regulation of localization lipid storage positive regulation of lipid localization regulation of lipid storage regulation of lipid localization positive regulation of cholesterol storage nutrient storage regulation of cholesterol storage positive regulation of lipid storage adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction high-density lipoprotein particle clearance plasma lipoprotein particle clearance regulation of plasma lipoprotein particle levels cholesterol efflux plasma lipoprotein particle organization protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling cellular component organization high-density lipoprotein particle remodeling protein-lipid complex remodeling cellular component organization or biogenesis sphingolipid mediated signaling pathway regulation of sphingolipid mediated signaling pathway positive regulation of sphingolipid mediated signaling pathway lipopolysaccharide transport carbohydrate derivative transport intestinal lipid absorption digestion intestinal absorption digestive system process cholesterol import low-density lipoprotein particle clearance phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process phospholipid metabolic process phosphate-containing compound metabolic process phosphatidylcholine metabolic process phosphorus metabolic process regulation of phospholipid catabolic process regulation of phosphatidylcholine metabolic process regulation of phospholipid metabolic process regulation of catabolic process regulation of lipid catabolic process phosphatidylcholine catabolic process organophosphate metabolic process regulation of phosphatidylcholine catabolic process regulation of phosphorus metabolic process glycerophospholipid catabolic process	cellular anatomical structure membrane cell surface membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle cellular anatomical structure membrane cell surface membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle lytic vacuole vacuole intracellular membrane-bounded organelle lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002159	CD36 family	Family
A	IPR005428	CD36/scavenger receptor class B member 1	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	CD36 glycoprotein	CD36 glycoprotein

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	High-Density Lipoprotein (HDL) Receptors	C-terminal transmembrane domain of scavenger receptor BI (SR-BI)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.