☰ Navigation Tabs
Crystal structure of allosteric inhibitor, ARQ 092, in complex with autoinhibited form of AKT1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MRV 1MRV, 2UVM experimental model PDB 2UVM 1MRV, 2UVM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 16% butanol, 10mM ammonium sulfate, 0.1% 2-mercaptoethanol, 15% ethylene glycol, 50mM Tris, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.36 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.72 α = 90 b = 87.62 β = 90 c = 128.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.09280 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 92.7 0.055 25.5 12 13431
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MRV, 2UVM 2.7 8 12090 638 87.54 0.21271 0.20961 0.2245 0.2686 0.2853 RANDOM 67.735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -1.7 2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.776 r_dihedral_angle_4_deg 21.066 r_dihedral_angle_3_deg 18.776 r_long_range_B_refined 11.888 r_long_range_B_other 11.887 r_scangle_other 7.824 r_mcangle_it 7.69 r_mcangle_other 7.689 r_dihedral_angle_1_deg 6.672 r_mcbond_other 5.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.776 r_dihedral_angle_4_deg 21.066 r_dihedral_angle_3_deg 18.776 r_long_range_B_refined 11.888 r_long_range_B_other 11.887 r_scangle_other 7.824 r_mcangle_it 7.69 r_mcangle_other 7.689 r_dihedral_angle_1_deg 6.672 r_mcbond_other 5.295 r_mcbond_it 5.293 r_scbond_it 5.255 r_scbond_other 5.253 r_angle_refined_deg 1.526 r_angle_other_deg 0.874 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2762 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing