4XSO

Crystal structure of apo-form Alr3699/HepE from Anabaena sp. strain PCC 7120


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72891.0 M ammonium citrate tribasic pH 7.0, 0.1 M Bis-Tris propane pH 7.0
Crystal Properties
Matthews coefficientSolvent content
2.244.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.289α = 90
b = 133.469β = 90
c = 142.812γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2013-10-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.97923SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.015099.60.08417.563.348403
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.012.08990.4812.963.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0138.7145852246796.420.197110.194460.24567RANDOM41.148
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.27-1.1-1.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.712
r_dihedral_angle_4_deg19.308
r_dihedral_angle_3_deg14.005
r_long_range_B_other8.637
r_long_range_B_refined8.623
r_scangle_other7.07
r_dihedral_angle_1_deg5.977
r_scbond_it4.943
r_scbond_other4.937
r_mcangle_it4.335
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.712
r_dihedral_angle_4_deg19.308
r_dihedral_angle_3_deg14.005
r_long_range_B_other8.637
r_long_range_B_refined8.623
r_scangle_other7.07
r_dihedral_angle_1_deg5.977
r_scbond_it4.943
r_scbond_other4.937
r_mcangle_it4.335
r_mcangle_other4.334
r_mcbond_it3.464
r_mcbond_other3.461
r_angle_refined_deg1.806
r_angle_other_deg0.874
r_chiral_restr0.108
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5560
Nucleic Acid Atoms
Solvent Atoms149
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PHENIXphasing
HKL-2000data extraction