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Structure of GluK2-LBD in complex with GluAzo
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3G3F PDB ENTRY 3G3F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2.05 M lithium sulfate, 10 mM magnesium chloride, 50 mM MES sodium, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.65 66.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.609 α = 90 b = 102.609 β = 90 c = 282.513 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2011-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.8 0.07 27.54 10.6 60346 60248 -3 -3 34.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 100 0.605 3.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3G3F 2 19.92 60245 3042 99.99 0.175 0.1734 0.172 0.2039 0.2021 RANDOM 36.3453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.25 0.49 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 15.263 r_scangle_it 6.217 r_dihedral_angle_1_deg 5.979 r_scbond_it 3.73 r_mcangle_it 1.833 r_angle_refined_deg 1.573 r_mcbond_it 0.977 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.471 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 15.263 r_scangle_it 6.217 r_dihedral_angle_1_deg 5.979 r_scbond_it 3.73 r_mcangle_it 1.833 r_angle_refined_deg 1.573 r_mcbond_it 0.977 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4082 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms 45
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction