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Model of the yeast F1Fo-ATP synthase dimer based on subtomogram average
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPD
Sample ATP SYNTHASE DIMER FROM MITOCHONDRIA OF SACCHAROMYCES CEREVISIAE
Specimen Preparation Sample Aggregation State CELL Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 100, INSTRUMENT- HOMEMADE PLUNGER, METHOD- SINGLE SIDE MANUAL BLOTTING FOR 5 SECONDS.,
3D Reconstruction Reconstruction Method TOMOGRAPHY Number of Particles 121 Reported Resolution (Å) 37 Resolution Method Other Details MODEL BASED ON PDBS 2WPD,2CLY AND 2BO5. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2161. (DEPOSITION ID: 10941). Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (2WPD) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY
Data Acquisition Detector Type GATAN ULTRASCAN 1000 (2k x 2k) Electron Dose (electrons/Å**2) 160
Imaging Experiment 1 Date of Experiment 2009-03-11 Temperature (Kelvin) 80 Microscope Model FEI POLARA 300 Minimum Defocus (nm) 6500 Maximum Defocus (nm) 7500 Minimum Tilt Angle (degrees) -50 Maximum Tilt Angle (degrees) 60 Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 41000 Calibrated Magnification 24500 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING UCSF Chimera RECONSTRUCTION IMOD