Model of the yeast F1Fo-ATP synthase dimer based on subtomogram average
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| T | SCOP2B Superfamily | ATP synthase B chain-like | 8032773 | 3001636 | SCOP2B (2022-06-29) |
| QA [auth t] | SCOP2B Superfamily | ATP synthase B chain-like | 8032773 | 3001636 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| DA [auth g] | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| CA [auth f] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| CA [auth f] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| CA [auth f] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| BA [auth e] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| BA [auth e] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| BA [auth e] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| AA [auth d] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| AA [auth d] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| AA [auth d] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| Y [auth b] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| Y [auth b] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| Y [auth b] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Mitochondrial ATP synthase coupling factor 6 | 8039041 | 3001984 | SCOP2B (2022-06-29) |
| SA [auth v] | SCOP2B Superfamily | Mitochondrial ATP synthase coupling factor 6 | 8039041 | 3001984 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | ATP synthase D chain-like | 8032774 | 3001647 | SCOP2B (2022-06-29) |
| RA [auth u] | SCOP2B Superfamily | ATP synthase D chain-like | 8032774 | 3001647 | SCOP2B (2022-06-29) |
| Z [auth c] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| Z [auth c] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| Z [auth c] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| X [auth a] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| X [auth a] | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| X [auth a] | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T | Beta-barrel_RND | e4b2qT2 | A: alpha bundles | X: Fusion glycoprotein F2 | H: HTH | T: winged helix domain | F: Beta-barrel_RND | ECOD (develop294) |
| QA [auth t] | N-glycanase_C | e4b2qt2 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: N-glycanase_C | ECOD (develop294) |
| S | RRM_1 | e4b2qS1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| R | RRM_1 | e4b2qR1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| Q | RRM_1 | e4b2qQ1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| PA [auth s] | RRM_1 | e4b2qs1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| P | RRM_1 | e4b2qP1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| OA [auth r] | RRM_1 | e4b2qr1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| O | CblD | e4b2qO2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| NA [auth q] | RRM_1 | e4b2qq1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| N | RRM_1 | e4b2qN1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| MA [auth p] | RRM_1 | e4b2qp1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| M | CblD | e4b2qM2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| LA [auth o] | CblD | e4b2qo2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| L | RRM_1 | e4b2qL1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| KA [auth n] | RRM_1 | e4b2qn1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| K | CblD | e4b2qK2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| JA [auth m] | RRM_1 | e4b2qm1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| J | OSCP | e4b2qJ1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| IA [auth l] | RRM_1 | e4b2ql1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| HA [auth k] | CblD | e4b2qk2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| GA [auth j] | CblD | e4b2qj2 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
| I | OSCP | e4b2qI1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| FA [auth i] | ABC_tran | e4b2qi1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (develop294) |
| H | ATP-synt_DE_N | e4b2qH1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: ATP-synt_DE_N | ECOD (develop294) |
| H | BARF1_ig2 | e4b2qH2 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: BARF1_ig2 | ECOD (develop294) |
| EA [auth h] | HypA | e4b2qh1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Fibronectin type I module-like | T: Fibronectin type I module | F: HypA | ECOD (develop294) |
| EA [auth h] | BARF1_ig2 | e4b2qh2 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: BARF1_ig2 | ECOD (develop294) |
| G | tRNA_anti-codon | e4b2qG2 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: tRNA_anti-codon | ECOD (develop294) |
| DA [auth g] | tRNA_anti-codon | e4b2qg1 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: tRNA_anti-codon | ECOD (develop294) |
| F | V-set | e4b2qF4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| E | OSCP | e4b2qE1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| E | V-set | e4b2qE4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| CA [auth f] | V-set | e4b2qf4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| BA [auth e] | V-set | e4b2qe4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| D | V-set | e4b2qD4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| AA [auth d] | V-set | e4b2qd4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| Y [auth b] | RNA_pol_Rpb1_3 | e4b2qb1 | A: alpha bundles | X: DP domain | H: DP domain | T: DP domain | F: RNA_pol_Rpb1_3 | ECOD (develop294) |
| B | OSCP | e4b2qB1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| W | OSCP | e4b2qW1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| TA [auth w] | Cathelicidins | e4b2qw1 | A: alpha bundles | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Cathelicidins | ECOD (develop294) |
| V | OSCP | e4b2qV1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| SA [auth v] | FtsJ | e4b2qv1 | A: alpha bundles | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: FtsJ | ECOD (develop294) |
| U | OSCP | e4b2qU1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (develop294) |
| RA [auth u] | Cathelicidins | e4b2qu1 | A: alpha bundles | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Cathelicidins | ECOD (develop294) |
| Z [auth c] | RNA_pol_Rpb1_3 | e4b2qc1 | A: alpha bundles | X: DP domain | H: DP domain | T: DP domain | F: RNA_pol_Rpb1_3 | ECOD (develop294) |
| X [auth a] | RNA_pol_Rpb1_3 | e4b2qa1 | A: alpha bundles | X: DP domain | H: DP domain | T: DP domain | F: RNA_pol_Rpb1_3 | ECOD (develop294) |
| C | RNA_pol_Rpb1_3 | e4b2qC1 | A: alpha bundles | X: DP domain | H: DP domain | T: DP domain | F: RNA_pol_Rpb1_3 | ECOD (develop294) |
| A | RNA_pol_Rpb1_3 | e4b2qA1 | A: alpha bundles | X: DP domain | H: DP domain | T: DP domain | F: RNA_pol_Rpb1_3 | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| QA [auth t], T | PF05405 | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B) | Mitochondrial ATP synthase B chain precursor (ATP-synt_B) | - | Family |
| PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
| FA [auth i], I | PF04627 | Mitochondrial ATP synthase epsilon chain (ATP-synt_Eps) | Mitochondrial ATP synthase epsilon chain | - | Family |
| EA [auth h], H | PF02823 | ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N) | ATP synthase, Delta/Epsilon chain, beta-sandwich domain | Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensit ... | Domain |
| EA [auth h], H | PF21334 | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain (ATPD_C_fung) | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain | F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from fungi (called epsilon in bacteria or chloropla ... | Domain |
| DA [auth g], G | PF00231 | ATP synthase (ATP-synt) | ATP synthase | Domain | |
| BA [auth e], CA [auth f], E, F | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| BA [auth e], CA [auth f], E, F | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| BA [auth e], CA [auth f], E, F | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| AA [auth d], D | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| AA [auth d], D | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| AA [auth d], D | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| B, Y [auth b] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| B, Y [auth b] | PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | |
| B, Y [auth b] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| TA [auth w], W | PF00213 | ATP synthase delta (OSCP) subunit (OSCP) | ATP synthase delta (OSCP) subunit | - | Family |
| SA [auth v], V | PF05511 | Mitochondrial ATP synthase coupling factor 6 (ATP-synt_F6) | Mitochondrial ATP synthase coupling factor 6 | - | Family |
| RA [auth u], U | PF05873 | ATP synthase D chain, mitochondrial (ATP5H) (Mt_ATP-synt_D) | ATP synthase D chain, mitochondrial (ATP5H) | - | Family |
| A, C, X [auth a], Z [auth c] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| A, C, X [auth a], Z [auth c] | PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | |
| A, C, X [auth a], Z [auth c] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














