3TBJ

The 1.7A crystal structure of Actibind a T2 ribonucleases as antitumorigenic agents


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.4564.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.457α = 90
b = 78.457β = 90
c = 103.708γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-1SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7734.56998.60.06118.25.23583235832
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.87910.8070.80714.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.833.9732945173899.670.155440.153780.18736RANDOM27.343
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.630.821.63-2.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.99
r_dihedral_angle_4_deg25.273
r_dihedral_angle_3_deg12.223
r_dihedral_angle_1_deg6.905
r_scangle_it4.785
r_scbond_it3.338
r_angle_refined_deg2.095
r_mcangle_it1.998
r_mcbond_it1.245
r_angle_other_deg1.061
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.99
r_dihedral_angle_4_deg25.273
r_dihedral_angle_3_deg12.223
r_dihedral_angle_1_deg6.905
r_scangle_it4.785
r_scbond_it3.338
r_angle_refined_deg2.095
r_mcangle_it1.998
r_mcbond_it1.245
r_angle_other_deg1.061
r_mcbond_other0.426
r_chiral_restr0.126
r_bond_refined_d0.026
r_gen_planes_refined0.012
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1878
Nucleic Acid Atoms
Solvent Atoms278
Heterogen Atoms64

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection