X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3BUX 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop6.5298100mM Bis-tris propane, 50mM ammonium sulfate, pH 6.5, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1141.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.743α = 90
b = 104.483β = 90.19
c = 60.548γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker AXIOM 2002009-06-10SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.925097.60.06511.344854548545
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.921.9992.50.2032.94575

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3BUX1.9247.0846063246297.40.16020.16020.15910.1802RANDOM26.9618
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.24-0.830.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.057
r_dihedral_angle_4_deg19.501
r_dihedral_angle_3_deg16.765
r_scangle_it7.114
r_scbond_it5.058
r_dihedral_angle_1_deg4.51
r_mcangle_it3.262
r_rigid_bond_restr3.229
r_mcbond_it2.151
r_angle_refined_deg1.627
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.057
r_dihedral_angle_4_deg19.501
r_dihedral_angle_3_deg16.765
r_scangle_it7.114
r_scbond_it5.058
r_dihedral_angle_1_deg4.51
r_mcangle_it3.262
r_rigid_bond_restr3.229
r_mcbond_it2.151
r_angle_refined_deg1.627
r_chiral_restr0.151
r_bond_refined_d0.022
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5022
Nucleic Acid Atoms
Solvent Atoms584
Heterogen Atoms6

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling