3NEY

Crystal structure of the kinase domain of MPP1/p55

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	291	1.6M ammonium sulfate, 0.01M magnesium chloride, 0.1M sodium cacodylate. The sample solution also contained 0.002M GDP, 0.002M ADP, 0.005M magnesium chloride. Crystal growth was incubated for 5 months., pH 5.5, vapor diffusion, sitting drop, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
4.15	73

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 72.088	α = 90
b = 131.562	β = 90
c = 237.19	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX-300		2010-05-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.97949	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	40	99.9	0.165	6.6	6		106079

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.25	2.33	98.7		0.963		4.9	10330

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	pdb entry 1KGD	2.26	30	105554	2121	99.254	0.236	0.235	0.271	RANDOM	24.726

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.158			0.399		1.759

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.172
r_dihedral_angle_4_deg	19.296
r_dihedral_angle_3_deg	14.167
r_dihedral_angle_1_deg	6.032
r_scangle_it	4.354
r_scbond_it	2.581
r_mcangle_it	1.746
r_angle_refined_deg	1.456
r_mcbond_it	0.894
r_angle_other_deg	0.866

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.172
r_dihedral_angle_4_deg	19.296
r_dihedral_angle_3_deg	14.167
r_dihedral_angle_1_deg	6.032
r_scangle_it	4.354
r_scbond_it	2.581
r_mcangle_it	1.746
r_angle_refined_deg	1.456
r_mcbond_it	0.894
r_angle_other_deg	0.866
r_mcbond_other	0.167
r_chiral_restr	0.084
r_bond_refined_d	0.016
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8355
Nucleic Acid Atoms
Solvent Atoms	201
Heterogen Atoms	91

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.