3NEY | pdb_00003ney

Crystal structure of the kinase domain of MPP1/p55

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth E]	d3neye1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth E]	d3neye2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth F]	d3neyf1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth F]	d3neyf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3neyd1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3neyd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3neyc1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3neyc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3neyb1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3neyb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3neya1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3neya2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth E]	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2B (2022-06-29)
A	SCOP2 Family	Guanylate kinase-like	8019117	4004031	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	P-loop nucleotide/nucleoside kinase-like	8058033	3002021	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth E]	Guanylate_kin	e3neyE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)
E [auth F]	Guanylate_kin	e3neyF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)
D	Guanylate_kin	e3neyD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)
C	Guanylate_kin	e3neyC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)
B	Guanylate_kin	e3neyB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)
A	Guanylate_kin	e3neyA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Guanylate_kin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth E]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
F [auth E]	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
E [auth F]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
E [auth F]	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
D	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.30.63.10	Alpha Beta	2-Layer Sandwich	Guanylate Kinase phosphate binding domain	Guanylate Kinase phosphate binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	PF00625	Guanylate kinase (Guanylate_kin)	Guanylate kinase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	55 kDa erythrocyte membrane protein	protein binding binding signaling receptor binding nucleobase-containing compound kinase activity nucleoside monophosphate kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, phosphate group as acceptor GMP kinase activity transferase activity, transferring phosphorus-containing groups	cellular response to stimulus regulation of cell motility regulation of cellular process response to stimulus regulation of response to external stimulus neutrophil chemotaxis regulation of granulocyte chemotaxis taxis regulation of cell migration myeloid leukocyte migration cell migration regulation of immune system process cell motility locomotion cellular response to stimulus regulation of cell motility regulation of cellular process response to stimulus regulation of response to external stimulus neutrophil chemotaxis regulation of granulocyte chemotaxis taxis regulation of cell migration myeloid leukocyte migration cell migration regulation of immune system process cell motility locomotion cell chemotaxis chemotaxis regulation of biological process regulation of leukocyte chemotaxis regulation of leukocyte migration biological regulation response to external stimulus regulation of chemotaxis neutrophil migration granulocyte migration leukocyte migration cellular response to chemical stimulus regulation of response to stimulus immune system process response to chemical regulation of locomotion granulocyte chemotaxis regulation of neutrophil chemotaxis cellular process leukocyte chemotaxis regulation of neutrophil migration signaling signal transduction cell communication	cellular anatomical structure membrane cell-cell junction anchoring junction cell junction intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cytoskeleton centriolar satellite organelle membraneless organelle cellular anatomical structure membrane cell-cell junction anchoring junction cell junction intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cytoskeleton centriolar satellite organelle membraneless organelle microtubule cytoskeleton cell periphery plasma membrane cell projection stereocilium actin-based cell projection stereocilium bundle neuron projection cluster of actin-based cell projections plasma membrane bounded cell projection cell cortex cortical cytoskeleton cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR008145	Guanylate kinase/L-type calcium channel beta subunit	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR036034	PDZ superfamily	Homologous Superfamily
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR050716	Membrane-associated guanylate kinase	Family
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR035475	MPP1, SH3 domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR001452	SH3 domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR020590	Guanylate kinase, conserved site	Conserved Site
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR008144	Guanylate kinase-like domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR001478	PDZ domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth E]	Pharos: Q00013	tubular adenocarcinoma adenocarcinoma granular cell carcinoma astrocytic tumor cribriform carcinoma of breast lung carcinoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm Adenocarcinoma, Basal Cell atypical teratoid rhabdoid tumor osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cribriform carcinoma lung benign neoplasm tubular adenocarcinoma adenocarcinoma granular cell carcinoma astrocytic tumor cribriform carcinoma of breast lung carcinoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm Adenocarcinoma, Basal Cell atypical teratoid rhabdoid tumor osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cribriform carcinoma lung benign neoplasm malignant ependymoma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.