2J7X

STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX WITH LXXLL MOTIF FROM NCOA5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
185-7% PEG 8K, 5-7% PEG 1K, 0.13M LITHIUM SULPHATE, 0.1M TRIS PH 8.0 .
Crystal Properties
Matthews coefficientSolvent content
2.7455

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.55α = 90
b = 62.55β = 90
c = 171.7γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2000-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.14099.90.0611.7152077637.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.141000.39515

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1QKN2.14019670105699.90.1920.190.234RANDOM35.55
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.87-1.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.805
r_dihedral_angle_4_deg22.368
r_dihedral_angle_3_deg13.154
r_dihedral_angle_1_deg5.819
r_scangle_it3.018
r_scbond_it2.091
r_angle_other_deg1.692
r_angle_refined_deg1.391
r_mcangle_it1.332
r_mcbond_it0.894
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.805
r_dihedral_angle_4_deg22.368
r_dihedral_angle_3_deg13.154
r_dihedral_angle_1_deg5.819
r_scangle_it3.018
r_scbond_it2.091
r_angle_other_deg1.692
r_angle_refined_deg1.391
r_mcangle_it1.332
r_mcbond_it0.894
r_nbd_refined0.222
r_symmetry_vdw_other0.194
r_nbd_other0.177
r_nbtor_refined0.173
r_xyhbond_nbd_refined0.145
r_symmetry_vdw_refined0.124
r_symmetry_hbond_refined0.089
r_nbtor_other0.088
r_chiral_restr0.083
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1851
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing