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STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX WITH LXXLL MOTIF FROM NCOA5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QKN PDB ENTRY 1QKN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 5-7% PEG 8K, 5-7% PEG 1K, 0.13M LITHIUM SULPHATE, 0.1M TRIS PH 8.0 .
Crystal Properties Matthews coefficient Solvent content 2.74 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.55 α = 90 b = 62.55 β = 90 c = 171.7 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2000-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 99.9 0.06 11.7 15 20776 37.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.39 5 15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QKN 2.1 40 19670 1056 99.9 0.192 0.19 0.1962 0.234 0.23 RANDOM 35.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.87 -1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.805 r_dihedral_angle_4_deg 22.368 r_dihedral_angle_3_deg 13.154 r_dihedral_angle_1_deg 5.819 r_scangle_it 3.018 r_scbond_it 2.091 r_angle_other_deg 1.692 r_angle_refined_deg 1.391 r_mcangle_it 1.332 r_mcbond_it 0.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.805 r_dihedral_angle_4_deg 22.368 r_dihedral_angle_3_deg 13.154 r_dihedral_angle_1_deg 5.819 r_scangle_it 3.018 r_scbond_it 2.091 r_angle_other_deg 1.692 r_angle_refined_deg 1.391 r_mcangle_it 1.332 r_mcbond_it 0.894 r_nbd_refined 0.222 r_symmetry_vdw_other 0.194 r_nbd_other 0.177 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.124 r_symmetry_hbond_refined 0.089 r_nbtor_other 0.088 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1851 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing