2J7X

STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX WITH LXXLL MOTIF FROM NCOA5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of Agonist-Bound Estrogen Receptor Beta Lbd in Complex with Lxxll Motif from Ncoa5

Pike, A.C.W.Brzozowski, A.M.Hubbard, R.E.Walton, J.Bonn, T.Thorsell, A.-G.Engstrom, O.Ljunggren, J.Gustaffson, J.-A.Carlquist, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ESTROGEN RECEPTOR BETAA255Rattus norvegicusMutation(s): 0 
Gene Names: Esr2ErbetaNr3a2
Find proteins for Q62986 (Rattus norvegicus)
Explore Q62986 
Go to UniProtKB:  Q62986
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NUCLEAR RECEPTOR COACTIVATOR 5B17Homo sapiensMutation(s): 0 
Gene Names: NCOA5KIAA1637
Find proteins for Q9HCD5 (Homo sapiens)
Explore Q9HCD5 
Go to UniProtKB:  Q9HCD5
NIH Common Fund Data Resources
PHAROS  Q9HCD5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EST
Query on EST

Download CCD File 
A
ESTRADIOL
C18 H24 O2
VOXZDWNPVJITMN-ZBRFXRBCSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
A
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
BCT
Query on BCT

Download CCD File 
A
BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
ESTKi:  100   nM  BindingDB
ESTEC50:  0.3799999952316284   nM  BindingDB
ESTEC50:  1   nM  BindingDB
ESTIC50:  2.9000000953674316   nM  BindingDB
ESTIC50:  1.100000023841858   nM  BindingDB
ESTIC50:  1.7000000476837158   nM  BindingDB
ESTEC50:  0.5   nM  BindingDB
ESTEC50:  5.699999809265137   nM  BindingDB
ESTIC50:  10.739999771118164   nM  BindingDB
ESTKi:  0.3799999952316284   nM  BindingDB
ESTEC50:  0.12999999523162842   nM  BindingDB
ESTEC50:  0.07999999821186066   nM  BindingDB
ESTEC50:  0.25   nM  BindingDB
ESTIC50:  5.599999904632568   nM  BindingDB
ESTIC50:  1   nM  BindingDB
ESTIC50:  0.009999999776482582   nM  BindingDB
ESTEC50:  0.8999999761581421   nM  BindingDB
ESTIC50:  3.5999999046325684   nM  BindingDB
ESTEC50:  30   nM  BindingDB
ESTEC50:  0.8399999737739563   nM  BindingDB
ESTIC50:  16.700000762939453   nM  BindingDB
ESTKd:  0.5   nM  BindingDB
ESTIC50:  1.7000000476837158   nM  BindingDB
ESTEC50:  0.07000000029802322   nM  BindingDB
ESTIC50:  0.5   nM  BindingDB
ESTEC50:  0.20000000298023224   nM  BindingDB
ESTIC50:  1.399999976158142   nM  BindingDB
ESTEC50:  2.0999999046325684   nM  BindingDB
ESTEC50:  5.599999904632568   nM  BindingDB
ESTEC50:  0.7200000286102295   nM  BindingDB
ESTEC50:  0.30000001192092896   nM  BindingDB
ESTIC50:  4   nM  BindingDB
ESTEC50:  0.009999999776482582   nM  BindingDB
ESTEC50:  11   nM  BindingDB
ESTEC50:  0.10000000149011612   nM  BindingDB
ESTIC50:  0.699999988079071   nM  BindingDB
ESTEC50:  9.699999809265137   nM  BindingDB
ESTKi:  3.5   nM  BindingDB
ESTEC50:  1.0800000429153442   nM  BindingDB
ESTIC50:  3   nM  BindingDB
ESTKi:  2   nM  BindingDB
ESTIC50:  2   nM  BindingDB
ESTIC50:  3.200000047683716   nM  BindingDB
ESTIC50:  19   nM  BindingDB
ESTEC50:  0.800000011920929   nM  BindingDB
ESTIC50:  1.1799999475479126   nM  BindingDB
ESTEC50:  1.399999976158142   nM  BindingDB
ESTIC50:  24   nM  BindingDB
ESTIC50:  2.299999952316284   nM  BindingDB
ESTIC50 :  1.7000000476837158   nM  PDBBind
ESTEC50:  0.6700000166893005   nM  BindingDB
ESTKi:  0.019999999552965164   nM  BindingDB
ESTIC50:  2   nM  BindingDB
ESTEC50:  0.03999999910593033   nM  BindingDB
ESTIC50:  1.2000000476837158   nM  BindingDB
ESTIC50:  1.600000023841858   nM  BindingDB
ESTEC50:  0.4000000059604645   nM  BindingDB
ESTEC50:  0.46000000834465027   nM  BindingDB
ESTIC50:  11   nM  BindingDB
ESTEC50:  1.5   nM  BindingDB
ESTEC50:  0.14000000059604645   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 
  • Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.55α = 90
b = 62.55β = 90
c = 171.7γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-11-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Refinement description, Version format compliance