2BJR

Crystal structure of the nematode sperm cell motility protein MFP2B


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.5PROTEIN WAS CRYSTALLIZED FROM 100 MM NA MES PH 4.5, 1.85 M AMMONIUM SULPHATE, 10 MM DTT, 10 MM ERCL3, 40 MM KSCN
Crystal Properties
Matthews coefficientSolvent content
2.3747.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.513α = 90
b = 52.954β = 99.17
c = 95.542γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRROR2003-10-11MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.847.14930.12114.7748554
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8596.90.733.111.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.820710553721930.1860.1840.223RANDOM25.49
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.09-0.740.13-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.884
r_scangle_it4.143
r_scbond_it2.616
r_mcangle_it1.885
r_angle_refined_deg1.513
r_mcbond_it1.044
r_angle_other_deg0.812
r_symmetry_hbond_refined0.32
r_symmetry_vdw_other0.304
r_nbd_other0.258
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.884
r_scangle_it4.143
r_scbond_it2.616
r_mcangle_it1.885
r_angle_refined_deg1.513
r_mcbond_it1.044
r_angle_other_deg0.812
r_symmetry_hbond_refined0.32
r_symmetry_vdw_other0.304
r_nbd_other0.258
r_nbd_refined0.207
r_symmetry_vdw_refined0.186
r_xyhbond_nbd_refined0.184
r_chiral_restr0.092
r_nbtor_other0.084
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5636
Nucleic Acid Atoms
Solvent Atoms925
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing