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Crystal structure of the nematode sperm cell motility protein MFP2B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 PROTEIN WAS CRYSTALLIZED FROM 100 MM NA MES PH 4.5, 1.85 M AMMONIUM SULPHATE, 10 MM DTT, 10 MM ERCL3, 40 MM KSCN
Crystal Properties Matthews coefficient Solvent content 2.37 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.513 α = 90 b = 52.954 β = 99.17 c = 95.542 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 2003-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.14 93 0.1 21 14.7 74855 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 96.9 0.73 3.1 11.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 20 71055 3721 93 0.186 0.184 0.223 RANDOM 25.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.74 0.13 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.884 r_scangle_it 4.143 r_scbond_it 2.616 r_mcangle_it 1.885 r_angle_refined_deg 1.513 r_mcbond_it 1.044 r_angle_other_deg 0.812 r_symmetry_hbond_refined 0.32 r_symmetry_vdw_other 0.304 r_nbd_other 0.258
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.884 r_scangle_it 4.143 r_scbond_it 2.616 r_mcangle_it 1.885 r_angle_refined_deg 1.513 r_mcbond_it 1.044 r_angle_other_deg 0.812 r_symmetry_hbond_refined 0.32 r_symmetry_vdw_other 0.304 r_nbd_other 0.258 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.092 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5636 Nucleic Acid Atoms Solvent Atoms 925 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing