2MJ7

Solution NMR structure of beta-adaptin appendage domain of human adaptor protein complex 4 subunit beta, Northeast Structural Genomics Consortium (NESG) Target HR8998C

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.2 mM HR8998C NC	90% H2O/10% D2O
2	2D 1H-13C HSQC aliphatic	0.2 mM HR8998C NC	90% H2O/10% D2O
3	3D HNCO	0.2 mM HR8998C NC	90% H2O/10% D2O
4	3D CBCA(CO)NH	0.2 mM HR8998C NC	90% H2O/10% D2O
5	3D HNCACB	0.2 mM HR8998C NC	90% H2O/10% D2O
6	3D HN(CA)CO	0.2 mM HR8998C NC	90% H2O/10% D2O
7	3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY	0.2 mM HR8998C NC	90% H2O/10% D2O
8	2D 1H-13C HSQC aromatic	0.2 mM HR8998C NC	90% H2O/10% D2O
9	3D HBHA(CO)NH	0.2 mM HR8998C NC	90% H2O/10% D2O
10	3D HA(CO)NH	0.2 mM HR8998C NC	90% H2O/10% D2O
11	3D HNCA	0.2 mM HR8998C NC	90% H2O/10% D2O
12	3D (H)CCH-TOCSY aliphatic	0.2 mM HR8998C NC	90% H2O/10% D2O
13	3D (H)CCH-COSY aliphatic	0.2 mM HR8998C NC	90% H2O/10% D2O
14	3D (H)CCH-COSY aromatic	0.2 mM HR8998C NC	90% H2O/10% D2O
15	2D 1H-15N long-range HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
16	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O		6.5	ambient	295
17	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
18	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
19	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
20	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
21	2D 1H-15N HSQC	0.2 mM HR8998C NC5, Pf1 phage	80% H2O/20% D2O
22	2D 1H-15N J-modulated HSQC	0.2 mM HR8998C NC5, 4% PEG/hexanol	80% H2O/20% D2O		6.5	ambient	295
23	2D 1H-15N J-modulated HSQC	0.2 mM HR8998C NC5, 4% PEG/hexanol	80% H2O/20% D2O		6.5	ambient	295
24	2D 1H-15N J-modulated HSQC	0.2 mM HR8998C NC5, 4% PEG/hexanol	80% H2O/20% D2O		6.5	ambient	295
25	2D 1H-13C CT-HSQC methyl	0.4 mM HR8998C NC5	90% H2O/10% D2O

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Agilent	DD2	600
3	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing	Structure determination was performed by running CYANA and ASDP in parallel using NOE-based constraints. Consensus peak assignments were selected and used in iterative refinement with CYANA, with PHI, PSI and CHI1 dihedral angle constraints from TALOSN, as well as RDC constraints from two alignment media added at later stages. The 20 conformers out of 100 with the lowest target function were further refined by simulated annealing in explicit water bath using the program CNS with PARAM19 force field.	CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
3	geometry optimization	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	data analysis	AS-DP	1.0	Huang, Tejero, Powers and Montelione
8	refinement	AS-DP	1.0	Huang, Tejero, Powers and Montelione
9	structure solution	AS-DP	1.0	Huang, Tejero, Powers and Montelione
10	data analysis	AutoAssign	2.3.0	Zimmerman, Moseley, Kulikowski and Montelione
11	chemical shift assignment	AutoAssign	2.3.0	Zimmerman, Moseley, Kulikowski and Montelione
12	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
13	data analysis	XEASY		Bartels et al.
14	processing	PROSA	6.4	Guntert
15	collection	VnmrJ		Varian
16	data analysis	Sparky		Goddard
17	geometry optimization	TALOSN		Shen, Cornilescu, Delaglio and Bax
18	chemical shift assignment	CARA	1.8.4	Keller and Wuthrich
19	data analysis	CARA	1.8.4	Keller and Wuthrich
20	peak picking	CARA	1.8.4	Keller and Wuthrich
21	structure validation	PSVS	1.5	Bhattacharya, Montelione