2MJ7

Solution NMR structure of beta-adaptin appendage domain of human adaptor protein complex 4 subunit beta, Northeast Structural Genomics Consortium (NESG) Target HR8998C

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	B2-adapt-app_C	e2mj7A1	A: a+b two layers	X: TBP-like	H: Subdomain of clathrin and coatomer appendage domain (From Topology)	T: Subdomain of clathrin and coatomer appendage domain	F: B2-adapt-app_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09066	Beta2-adaptin appendage, C-terminal sub-domain (B2-adapt-app_C)	Beta2-adaptin appendage, C-terminal sub-domain	Members of this family adopt a structure consisting of a 5 stranded beta-sheet, flanked by one alpha helix on the outer side, and by two alpha helices on the inner side. This domain is required for binding to clathrin, and its subsequent polymerisati ...	Members of this family adopt a structure consisting of a 5 stranded beta-sheet, flanked by one alpha helix on the outer side, and by two alpha helices on the inner side. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	AP-4 complex subunit beta-1	clathrin binding protein binding binding	protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process intracellular protein transport protein targeting vesicle-mediated transport protein localization to somatodendritic compartment	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle trans-Golgi network cytoplasm membrane coat protein-containing complex membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle trans-Golgi network cytoplasm membrane coat protein-containing complex AP-type membrane coat adaptor complex membrane membrane protein complex coated membrane AP-4 adaptor complex clathrin coat clathrin adaptor complex cytoplasmic side of membrane intracellular vesicle transport vesicle membrane bounding membrane of organelle trans-Golgi network transport vesicle membrane trans-Golgi network transport vesicle vesicle membrane cytoplasmic vesicle clathrin-coated vesicle coated vesicle Golgi-associated vesicle vesicle clathrin-coated vesicle membrane cytoplasmic side of transport vesicle membrane transport vesicle side of membrane cytoplasmic vesicle membrane coated vesicle membrane Golgi-associated vesicle membrane organelle membrane cytoplasmic side of trans-Golgi network transport vesicle membrane cytosol trans-Golgi network membrane endosome membrane-enclosed lumen intracellular organelle lumen organelle lumen endosome lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Domain
A	IPR015151	Beta-adaptin appendage, C-terminal subdomain	Domain
A	IPR026739	AP complex subunit beta	Family
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR012295	TBP domain superfamily	Homologous Superfamily
A	IPR016342	AP-1/2/4 complex subunit beta	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9Y6B7	hereditary spastic paraplegia 47 hereditary spastic paraplegia rheumatoid arthritis systemic lupus erythematosus ulcerative colitis breast carcinoma Hashimoto thyroiditis microcephaly neurodegenerative disease pancreatic intraductal papillary-mucinous carcinoma paraplegia skin basal cell carcinoma systemic sclerosis vitiligo Crohn disease hereditary spastic paraplegia 47 hereditary spastic paraplegia rheumatoid arthritis systemic lupus erythematosus ulcerative colitis breast carcinoma Hashimoto thyroiditis microcephaly neurodegenerative disease pancreatic intraductal papillary-mucinous carcinoma paraplegia skin basal cell carcinoma systemic sclerosis vitiligo Crohn disease heart disease hypothyroidism myocardial infarction osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Pick disease Spastic Paraplegia, Hereditary type 1 diabetes mellitus Graves disease intellectual disability myositis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.