2MII | pdb_00002mii

NMR structure of E. coli LpoB

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
2	3D HNCO	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
3	3D HN(CA)CO	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
4	3D BEST-HNCACB	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
5	3D BEST-HN(CO)CACB	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
6	3D HN(COCA)N(H)	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
7	2D Pro-HN(COCAN)	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
8	2D Pro-iHN(CAN)	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
9	2D 1H-13C HSQC aliphatic	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
10	2D 1H-13C HSQC aromatic	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
11	2D methyl 1H-13C-CT-HSQC	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
12	2D 1H-15N HMQC optimized for His sidechains	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
13	3D HCCH-TOCSY	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
14	3D H(CCO)NH	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
15	3D C(CO)NH	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
16	3D 1H-15N NOESY	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
17	3D 1H-13C NOESY aliphatic	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
18	3D 1H-13C NOESY aromatic	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
19	3D methyl 1H-13C NOESY	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000
20	Heteronuclear 1H-15N NOE	0.8 mM [U-100% 13C; U-100% 15N] LpoB, 100.0 mM CH3COOH/CH3COONa buffer	90% H2O/10% D2O	0.100	5.000	1.000 atm	308.000

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	vnmrs	800
2	Varian	vnmrs	600
3	Bruker	US2	950

NMR Refinement
Method	Details	Software
simulated annealing		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	750
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	ARIA	2.3.1	Linge, O'Donoghue and Nilges
2	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
3	data analysis	CcpNmr Analysis	2.2	CCPN
4	data analysis	TALOS+		Yang Shen, Frank Delaglio, Gabriel Cornilescu, and Ad Bax
5	structure solution	Unio10'	2.0.2	Torsten Herrmann
6	data analysis	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8	refinement	CNS