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Crystal structure of an uncharacterized conserved protein of COG5646 (ZP_00384875.1) from Lactobacillus casei ATCC 334 at 1.69 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 4 277 1.0M LiCl, 20.0% PEG-6000, 0.1M Citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, <NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP, NANODROP
Crystal Properties Matthews coefficient Solvent content 2.557158 51.899723
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.946 α = 90 b = 69.276 β = 90 c = 90.872 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-08-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.94926,0.97925 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.775 99.9 0.081 0.081 4.7 3.6 34612 23.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.73 100 0.662 0.662 1.1 3.7 2504
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.69 29.775 34565 1740 99.84 0.169 0.168 0.1726 0.197 0.2024 RANDOM 21.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.13 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.161 r_dihedral_angle_4_deg 17.39 r_dihedral_angle_3_deg 13.892 r_scangle_it 5.27 r_dihedral_angle_1_deg 5.251 r_scbond_it 3.853 r_mcangle_it 2.579 r_mcbond_it 2.074 r_angle_refined_deg 1.365 r_angle_other_deg 0.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.161 r_dihedral_angle_4_deg 17.39 r_dihedral_angle_3_deg 13.892 r_scangle_it 5.27 r_dihedral_angle_1_deg 5.251 r_scbond_it 3.853 r_mcangle_it 2.579 r_mcbond_it 2.074 r_angle_refined_deg 1.365 r_angle_other_deg 0.866 r_mcbond_other 0.517 r_nbd_refined 0.24 r_symmetry_vdw_other 0.209 r_symmetry_vdw_refined 0.197 r_nbd_other 0.188 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.132 r_nbtor_other 0.085 r_chiral_restr 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1998 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 31
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing