2I8D | pdb_00002i8d

Crystal structure of an uncharacterized conserved protein of COG5646 (ZP_00384875.1) from Lactobacillus casei ATCC 334 at 1.69 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2i8db_	Alpha and beta proteins (a+b)	Secretion chaperone-like	YdhG-like	YdhG-like	Uncharacterized protein LSEI2283	(Lacticaseibacillus casei ) [TaxId: 1582 ],	SCOPe (2.08)
A	d2i8da1	Alpha and beta proteins (a+b)	Secretion chaperone-like	YdhG-like	YdhG-like	Uncharacterized protein LSEI2283	(Lacticaseibacillus casei ) [TaxId: 1582 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	YdhG-like	8034425	3001474	SCOP2B (2022-06-29)
A	SCOP2 Family	YdhG-like	8022045	4002604	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YdhG-like	8034425	3001474	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF1801	e2i8dB1	A: a+b two layers	X: Type III secretory system chaperone-like	H: YdhG-like (From Topology)	T: YdhG-like	F: DUF1801	ECOD (1.6)
A	DUF1801	e2i8dA1	A: a+b two layers	X: Type III secretory system chaperone-like	H: YdhG-like (From Topology)	T: YdhG-like	F: DUF1801	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.1150.200	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1		CATH (4.3.0)
B	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)
A	3.90.1150.200	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1		CATH (4.3.0)
A	1.20.5.420	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Immunoglobulin FC, subunit C	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08818	Domain of unknown function (DU1801) (DUF1801)	Domain of unknown function (DU1801)	This domain is found in the Intracellular iron chaperone frataxin YdhG [1] and the uncharacterised protein YdeI from Bacillus subtilis.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014922	YdhG-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.