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Crystal Structure of HLA-A*2402 Complexed with a telomerase peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AO7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 1.6M Ammonium Sulphate, 0.1M Sodium Chloride, 0.1M HEPES, 10% v/v Dioxane, pH 7.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.23 61.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.505 α = 90 b = 132.186 β = 128.8 c = 91.197 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 78.62 99.4 0.153 0.153 3.3 3.2 28450 1 1 79.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 99.7 99.7 0.917 0.917 1.2 3.2 4174
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AO7 2.8 78.57 28388 28388 1438 99.27 0.187 0.187 0.183 0.2079 0.256 0.2726 RANDOM 36.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.81 5.7 -4.21 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.591 r_scangle_it 9.972 r_dihedral_angle_3_deg 9.361 r_dihedral_angle_4_deg 8.216 r_scbond_it 7.077 r_mcangle_it 4.787 r_mcbond_it 3.71 r_dihedral_angle_1_deg 1.907 r_angle_refined_deg 1.348 r_mcbond_other 0.892
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.591 r_scangle_it 9.972 r_dihedral_angle_3_deg 9.361 r_dihedral_angle_4_deg 8.216 r_scbond_it 7.077 r_mcangle_it 4.787 r_mcbond_it 3.71 r_dihedral_angle_1_deg 1.907 r_angle_refined_deg 1.348 r_mcbond_other 0.892 r_angle_other_deg 0.687 r_symmetry_vdw_other 0.239 r_symmetry_hbond_refined 0.238 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.22 r_symmetry_vdw_refined 0.219 r_nbd_other 0.213 r_nbtor_refined 0.19 r_xyhbond_nbd_other 0.122 r_nbtor_other 0.09 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6422 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 64
Software Software Software Name Purpose SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling