1JUA
Solution Structure of the Deoxyribose HIV-1Lai Initiation Sequence Stable Dimer
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2.7mM oligonucleotide 10 mM phosphate buffer 50 mM NaCl | 90% H2O/10% D2O | 50mM NaCl | 5.8 | ambient | 278 | |
2 | 2D NOESY | 2.7mM oligonucleotide 10 mM phosphate buffer 50 mM NaCl | 100% D2O | 50mM NaCl | 5.8 | ambient | 300 | |
3 | DQF-COSY | 2.7mM oligonucleotide 10 mM phosphate buffer 50 mM NaCl | 100% D2O | 50mM NaCl | 5.8 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
Simulated annealing Relaxation matrix refinement Chemical shifts back-calculation refinement | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 13 |
Conformers Submitted Total Number | 13 |
Representative Model | 9 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | ||
2 | processing | VNMR | ||
3 | structure solution | CNS | 1.0 | Brunger |
4 | iterative matrix relaxation | RELAZ | 1.0 | Lancelot |
5 | refinement | NUCHEMICS | Wijmenga |