☰ Navigation Tabs
Structure of the C-553 cytochrome from Bacillus pasteruii to 1.7 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 8MG/ML OF CYTOCHROME, 20MM TRIS.HCL, PH 8.0 AT 20 DEGREES C, HANGING DROPS IN HAMPTON RESEARCH 24-WELL LINBRO PLATES, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.09 α = 90 b = 39.16 β = 90 c = 43.99 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1996-12-15 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A 3 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.5 0.04 8.6 3.5 7404 10.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 97.1 0.101 5.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD 1.7 20 7404 7404 343 99.5 0.174 0.174 0.3699 0.206 RANDOM 10.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 15.2 p_special_tor 15 p_staggered_tor 12.3 p_scangle_it 5.24 p_planar_tor 4.4 p_scbond_it 3.811 p_mcangle_it 2.054 p_mcbond_it 1.593 p_multtor_nbd 0.377 p_singtor_nbd 0.178
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 15.2 p_special_tor 15 p_staggered_tor 12.3 p_scangle_it 5.24 p_planar_tor 4.4 p_scbond_it 3.811 p_mcangle_it 2.054 p_mcbond_it 1.593 p_multtor_nbd 0.377 p_singtor_nbd 0.178 p_chiral_restr 0.071 p_angle_d 0.027 p_planar_d 0.027 p_plane_restr 0.0248 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 496 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 43
Software Software Software Name Purpose MLPHARE phasing REFMAC refinement DENZO data reduction CCP4 data scaling ROTAVATA data scaling