Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth Z]SCOP2B SuperfamilyAPG6 N-terminal segment-like8090327 3002432 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF12063e8srqC1 A: alpha bundlesX: Spectrin repeat-likeH: MIT domain (From Topology)T: MIT domainF: PF12063ECOD (1.6)
CPF21127e8srqC2 A: alpha bundlesX: Spectrin repeat-likeH: MIT domain (From Topology)T: MIT domainF: PF21127ECOD (1.6)
F [auth X]PF00792e8srqX1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: C2 domain (From Topology)T: C2 domainF: PF00792ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF12063Atg1-like, MIT domain 1 (ATG1-like_MIT1)Atg1-like, MIT domain 1Members of this entry are serine/threonine-protein kinases and includes ATG1 from yeasts, Unc-51 from C. elegans and ULK1-2 from humans. ATG1 is required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway [1,2]. U ...Members of this entry are serine/threonine-protein kinases and includes ATG1 from yeasts, Unc-51 from C. elegans and ULK1-2 from humans. ATG1 is required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway [1,2]. Unc-51 is important for axonal elongation and axonal guidance [4] and ULK1-2 are involved in autophagy in response to starvation [3]. They consist of a kinase domain at the N-terminal (Pfam:PF00069) and two tandem microtubule interacting and transport (MIT) domains (tMIT) at the C-terminal. MIT domains are known to mediate protein-protein interactions. In ATG1, MIT domains mediate the interaction with ATG13 [1]. In ULK1-2, MIT domains control the regulatory function and localization of the proteins and also mediate interactions with additional autophagy proteins [3]. This is the C-terminal MIT domain (MIT2).
Domain
PF21127ATG1-like, MIT domain 2 (ATG1-like_MIT2)ATG1-like, MIT domain 2Members of this entry are serine/threonine-protein kinases and includes Atg1 from yeasts, Unc-51 from C. elegans and ULK1-2 from humans. Atg1 is required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway [1,2]. ...Members of this entry are serine/threonine-protein kinases and includes Atg1 from yeasts, Unc-51 from C. elegans and ULK1-2 from humans. Atg1 is required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway [1,2]. Unc-51 is important for axonal elongation and axonal guidance [4,5] and ULK1-2 are involved in autophagy in response to starvation [3]. They consist of a kinase domain at the N-terminal (Pfam:PF00069) and two tandem microtubule interacting and transport (MIT) domains (tMIT) at the C-terminal which, in ATG1, mediates the interaction with ATG13 [1]. In ULK1-2, MIT domain control the regulatory function and localization of the proteins and also mediate interactions with additional autophagy proteins [3]. This is the C-terminal MIT domain (MIT2).
Domain
E [auth W]PF00069Protein kinase domain (Pkinase)Protein kinase domain- Domain
E [auth W]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F [auth X]PF00792Phosphoinositide 3-kinase C2 (PI3K_C2)Phosphoinositide 3-kinase C2Phosphoinositide 3-kinase region postulated to contain a C2 domain. Outlier of Pfam:PF00168 family.Domain
G [auth Y]PF10186Vacuolar sorting 38 and autophagy-related subunit 14 (ATG14)Vacuolar sorting 38 and autophagy-related subunit 14- Family
H [auth Z]PF04111Apg6 BARA domain (APG6)Apg6 BARA domainIn yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the ...In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells [1]. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [2]. This entry is the Beta-Alpha repeated, autophagy-specific (BARA) domain [3].
Domain
H [auth Z]PF17675Apg6 coiled-coil region (APG6_N)Apg6 coiled-coil region- Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
RB1-inducible coiled-coil protein 1
Serine/threonine-protein kinase ULK1
Autophagy-related protein 13
E [auth W]Phosphoinositide 3-kinase regulatory subunit 4
F [auth X]Phosphatidylinositol 3-kinase catalytic subunit type 3
G [auth Y]Beclin 1-associated autophagy-related key regulator
H [auth Z]Beclin-1-C 35 kDa

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR019460Autophagy-related protein 11, C-terminalDomain
A, B
IPR040040Autophagy-related protein 11Family
IPR045269Serine/threonine-protein kinase Atg1-likeFamily
IPR000719Protein kinase domainDomain
IPR048941ATG1-like, MIT domain 2Domain
IPR016237Serine/threonine-protein kinase, Ulk1/Ulk2Family
IPR017441Protein kinase, ATP binding siteBinding Site
IPR022708Serine/threonine-protein kinase Atg1-like, tMIT domainDomain
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR008271Serine/threonine-protein kinase, active siteActive Site
IPR036570HORMA domain superfamilyHomologous Superfamily
IPR040182Autophagy-related protein 13Family
IPR018731Autophagy-related protein 13, N-terminalDomain
E [auth W]IPR016024Armadillo-type foldHomologous Superfamily
E [auth W]IPR021133HEAT, type 2Repeat
E [auth W]IPR011989Armadillo-like helicalHomologous Superfamily
E [auth W]IPR000719Protein kinase domainDomain
E [auth W]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth W]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth W]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
E [auth W]IPR001680WD40 repeatRepeat
E [auth W]IPR045162Serine/threonine-protein kinase Vps15-likeFamily
E [auth W]IPR008271Serine/threonine-protein kinase, active siteActive Site
F [auth X]IPR015433Phosphatidylinositol kinaseFamily
F [auth X]IPR016024Armadillo-type foldHomologous Superfamily
F [auth X]IPR008290Phosphatidylinositol 3-kinase, Vps34 typeFamily
F [auth X]IPR002420C2 phosphatidylinositol 3-kinase-type domainDomain
F [auth X]IPR018936Phosphatidylinositol 3/4-kinase, conserved siteConserved Site
F [auth X]IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
F [auth X]IPR001263Phosphoinositide 3-kinase, accessory (PIK) domainDomain
F [auth X]IPR042236Phosphoinositide 3-kinase, accessory (PIK) domain superfamilyHomologous Superfamily
F [auth X]IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
F [auth X]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
F [auth X]IPR035892C2 domain superfamilyHomologous Superfamily
G [auth Y]IPR018791UV radiation resistance protein/autophagy-related protein 14Family
H [auth Z]IPR038274Atg6/Beclin C-terminal domain superfamilyHomologous Superfamily
H [auth Z]IPR029318Beclin-1, BH3 domainDomain
H [auth Z]IPR040455Atg6, BARA domainDomain
H [auth Z]IPR007243Atg6/BeclinFamily
H [auth Z]IPR041691Atg6/beclin, coiled-coil domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosQ8TDY2
PharosO75385
PharosO75143
E [auth W]PharosQ99570
F [auth X]PharosQ8NEB9
G [auth Y]PharosQ6ZNE5
H [auth Z]PharosQ14457