4Y5W | pdb_00004y5w

Transcription factor-DNA complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth C]	SPRY	e4y5wC1	A: a/b three-layered sandwiches	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: SPRY	ECOD (v294.1)
C [auth D]	SPRY	e4y5wD1	A: a/b three-layered sandwiches	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: SPRY	ECOD (v294.1)
B		e4y5wB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F:	ECOD (v294.1)
A		e4y5wA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], H [auth C]	PF21354	Signal transducer and activator of transcription, linker domain (STAT_linker)	Signal transducer and activator of transcription, linker domain	This domain is found in Signal transducer and activator of transcription proteins (STAT) from animals. These proteins are activated in response to extracellular signals such as cytokines, growth factors and hormonal factors and translocate to the nuc ...	This domain is found in Signal transducer and activator of transcription proteins (STAT) from animals. These proteins are activated in response to extracellular signals such as cytokines, growth factors and hormonal factors and translocate to the nucleus, where they bind to specific promoter sequences in target genes. This entry represents the all-helical linker domain that connects the DNA binding domain (Pfam:PF02864) and the SH2 domain (Pfam:PF00017) [1-5].	Domain
A, B, C [auth D], H [auth C]	PF00017	SH2 domain (SH2)	SH2 domain		Domain
A, B, C [auth D], H [auth C]	PF01017	STAT transcription factor, coiled-coil domain (STAT_alpha)	STAT transcription factor, coiled-coil domain	STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. STATs share 6 structurally and ...	STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. STATs share 6 structurally and functionally conserved domains including: an N-terminal domain (ND) that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain (CCD) that is implicated in protein-protein interactions; a DNA-binding domain (DBD) with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain. This entry represents the coiled-coil domain (CCD)	Domain
A, B, C [auth D], H [auth C]	PF02864	STAT protein, DNA binding domain (STAT_bind)	STAT protein, DNA binding domain	STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA ...	STAT proteins (Signal Transducers and Activators of Transcription) are a family of transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors. This family represents the DNA binding domain of STAT, which has an ig-like fold. STAT proteins also include an SH2 domain Pfam:PF00017.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F], G [auth N]	DNA (5'-D(PTPTPGPTPCPTPTPCPCPTPAPGPGPAPAPAPTPCPCPAP*T)-3')	-	-	-
D [auth E], F [auth M]	DNA (5'-D(PAPTPGPGPAPTPTPTPCPCPTPAPGPGPAPAPGPAPCPAP*A)-3')	-	-	-
A, B, C [auth D], H [auth C]	Signal transducer and activator of transcription 6	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity protein phosphatase binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity protein phosphatase binding phosphatase binding protein binding enzyme binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription factor binding transcription coregulator binding transcription coactivator binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding	cellular response to stimulus cellular response to nitrogen compound regulation of cellular process response to stimulus signaling response to peptide hormone cellular response to growth hormone stimulus cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus response to hormone growth hormone receptor signaling pathway via JAK-STAT signal transduction enzyme-linked receptor protein signaling pathway cellular response to stimulus cellular response to nitrogen compound regulation of cellular process response to stimulus signaling response to peptide hormone cellular response to growth hormone stimulus cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus response to hormone growth hormone receptor signaling pathway via JAK-STAT signal transduction enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus regulation of biological process growth hormone receptor signaling pathway cell surface receptor signaling pathway response to endogenous stimulus biological regulation cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound response to growth hormone cellular response to chemical stimulus response to chemical cellular process response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus regulation of leukocyte proliferation regulation of mast cell proliferation cell population proliferation regulation of cell population proliferation leukocyte proliferation mast cell proliferation immune response negative regulation of response to stimulus negative regulation of immune response negative regulation of biological process negative regulation of type 2 immune response type 2 immune response regulation of response to stimulus negative regulation of immune system process immune system process regulation of type 2 immune response regulation of immune response regulation of immune system process adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of leukocyte activation regulation of cell activation B cell activation involved in immune response positive regulation of macromolecule biosynthetic process regulation of primary metabolic process multicellular organism development positive regulation of immune response positive regulation of macromolecule metabolic process system development positive regulation of DNA recombination positive regulation of immunoglobulin mediated immune response DNA recombination primary metabolic process DNA metabolic process immune effector process regulation of gene expression biosynthetic process positive regulation of DNA metabolic process B cell mediated immunity positive regulation of production of molecular mediator of immune response metabolic process regulation of macromolecule biosynthetic process regulation of DNA metabolic process immunoglobulin production regulation of developmental process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains somatic cell DNA recombination somatic diversification of immunoglobulins involved in immune response positive regulation of lymphocyte activation somatic recombination of immunoglobulin gene segments positive regulation of biosynthetic process regulation of immunoglobulin mediated immune response leukocyte activation involved in immune response positive regulation of isotype switching regulation of B cell activation positive regulation of immune effector process positive regulation of cellular process production of molecular mediator of immune response positive regulation of immunoglobulin production regulation of isotype switching cell activation regulation of macromolecule metabolic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression somatic diversification of immune receptors via germline recombination within a single locus regulation of lymphocyte activation multicellular organismal process lymphocyte mediated immunity regulation of immune effector process positive regulation of leukocyte mediated immunity regulation of DNA recombination regulation of isotype switching to IgE isotypes cell activation involved in immune response nucleobase-containing compound metabolic process positive regulation of developmental process positive regulation of isotype switching to IgE isotypes positive regulation of cell activation positive regulation of metabolic process anatomical structure development positive regulation of leukocyte activation leukocyte mediated immunity somatic diversification of immune receptors positive regulation of adaptive immune response regulation of nucleobase-containing compound metabolic process positive regulation of immune system process somatic recombination of immunoglobulin genes involved in immune response developmental process regulation of adaptive immune response regulation of B cell mediated immunity somatic diversification of immunoglobulins regulation of leukocyte mediated immunity positive regulation of multicellular organismal process macromolecule metabolic process regulation of production of molecular mediator of immune response regulation of metabolic process isotype switching immune system development immunoglobulin production involved in immunoglobulin-mediated immune response positive regulation of lymphocyte mediated immunity positive regulation of biological process lymphocyte activation positive regulation of B cell mediated immunity leukocyte activation positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of multicellular organismal process lymphocyte activation involved in immune response regulation of biosynthetic process isotype switching to IgE isotypes B cell activation gene expression immunoglobulin mediated immune response adaptive immune response positive regulation of B cell activation regulation of immunoglobulin production regulation of lymphocyte mediated immunity epithelium development mammary gland development gland development animal organ development tissue development mammary gland epithelium development epithelial cell proliferation mammary gland epithelial cell proliferation defense response response to stress cell surface receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT interleukin-4-mediated signaling pathway response to interleukin-4 cellular response to interleukin-4 anatomical structure morphogenesis gland morphogenesis mammary gland morphogenesis animal organ morphogenesis homeostatic process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis CD4-positive or CD8-positive, alpha-beta T cell lineage commitment cellular developmental process T-helper 1 cell lineage commitment cell development mononuclear cell differentiation lymphocyte differentiation CD4-positive, alpha-beta T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response T cell activation cell differentiation CD4-positive, alpha-beta T cell activation alpha-beta T cell activation T cell differentiation CD4-positive, alpha-beta T cell lineage commitment T-helper cell differentiation alpha-beta T cell lineage commitment hemopoiesis T cell differentiation involved in immune response T-helper 1 type immune response T-helper cell lineage commitment T cell lineage commitment positive T cell selection T-helper 1 cell differentiation T cell selection cell fate commitment leukocyte differentiation RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm cytosol sperm head-tail coupling apparatus RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm cytosol sperm head-tail coupling apparatus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], H [auth C]	IPR035857	STAT6, SH2 domain	Domain
A, B, C [auth D], H [auth C]	IPR048988	Signal transducer and activator of transcription, linker domain	Domain
A, B, C [auth D], H [auth C]	IPR036535	STAT transcription factor, N-terminal domain superfamily	Homologous Superfamily
A, B, C [auth D], H [auth C]	IPR013800	STAT transcription factor, all-alpha domain	Domain
A, B, C [auth D], H [auth C]	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B, C [auth D], H [auth C]	IPR000980	SH2 domain	Domain
A, B, C [auth D], H [auth C]	IPR001217	Transcription factor STAT	Family
A, B, C [auth D], H [auth C]	IPR008967	p53-like transcription factor, DNA-binding domain superfamily	Homologous Superfamily
A, B, C [auth D], H [auth C]	IPR013799	STAT transcription factor, protein interaction	Domain
A, B, C [auth D], H [auth C]	IPR015988	STAT transcription factor, coiled coil	Homologous Superfamily
A, B, C [auth D], H [auth C]	IPR013801	STAT transcription factor, DNA-binding	Domain
A, B, C [auth D], H [auth C]	IPR028187	STAT6, C-terminal	Domain
A, B, C [auth D], H [auth C]	IPR012345	STAT transcription factor, DNA-binding, N-terminal	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C [auth D], H [auth C]	Pharos: P42226	pulmonary fibrosis Edema head and neck cancer hemangiopericytoma asthma solitary fibrous tumor invasive ductal breast carcinoma lung cancer abdominal aortic aneurysm malignant tumor of neck osteosarcoma attention deficit hyperactivity disorder, inattentive type peripheral nervous system disease breast cancer chronic obstructive pulmonary disease pulmonary fibrosis Edema head and neck cancer hemangiopericytoma asthma solitary fibrous tumor invasive ductal breast carcinoma lung cancer abdominal aortic aneurysm malignant tumor of neck osteosarcoma attention deficit hyperactivity disorder, inattentive type peripheral nervous system disease breast cancer chronic obstructive pulmonary disease dermatitis, atopic juvenile dermatomyositis lung carcinoma allergic disease medulloblastoma ovarian cancer peripheral neuropathy atypical teratoid rhabdoid tumor cancer colorectal adenoma diffuse large B-cell lymphoma eosinophilic esophagitis head and neck neoplasm idiopathic interstitial pneumonia large cell medulloblastoma malignant mesothelioma allergic rhinitis neoplasm of neck atopic eczema pancreatic intraductal papillary-mucinous neoplasm psoriasis autism spectrum disorder subependymal giant cell astrocytoma colorectal cancer

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C [auth D], H [auth C]	PTR	Parent Component: TYR RESID: AA0039 PSI-MOD : O4'-phospho-L-tyrosine MOD:00048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.