Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth a]SCOP2B SuperfamilyCore histone-like8103851 3001387 SCOP2B (2022-06-29)
P [auth b]SCOP2B SuperfamilyCore histone-like8036586 3001387 SCOP2B (2022-06-29)
S [auth f]SCOP2B SuperfamilyCore histone-like8036586 3001387 SCOP2B (2022-06-29)
Q [auth d]SCOP2B SuperfamilyCore histone-like8036590 3001387 SCOP2B (2022-06-29)
R [auth e]SCOP2B SuperfamilyCore histone-like8103851 3001387 SCOP2B (2022-06-29)
T [auth g]SCOP2B SuperfamilyCore histone-like8036588 3001387 SCOP2B (2022-06-29)
U [auth h]SCOP2B SuperfamilyCore histone-like8103853 3001387 SCOP2B (2022-06-29)
V [auth i]SCOP2B SuperfamilyCore histone-like8036588 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth a]PF00125e6qlda1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
P [auth b]PF15511e6qldb1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
S [auth f]PF15511e6qldf1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
Q [auth d]PF00125e6qldd1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
R [auth e]PF00125e6qlde1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
T [auth g]PF00125,PF16211e6qldg1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
U [auth h]PF00125e6qldh1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
V [auth i]PF00125,PF16211e6qldi1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
G [auth L]F_UNCLASSIFIEDe6qldL1 A: a+b two layersX: Recombination-associated protein rdgC (From Topology)H: Recombination-associated protein rdgC (From Topology)T: Recombination-associated protein rdgCF: F_UNCLASSIFIEDECOD (1.6)
I [auth O]F_UNCLASSIFIEDe6qldO2 A: a+b two layersX: Kinetochore globular domain-like (From Topology)H: Kinetochore globular domain-like (From Topology)T: Kinetochore globular domain-likeF: F_UNCLASSIFIEDECOD (1.6)
I [auth O]PF09496e6qldO1 A: a+b two layersX: Kinetochore globular domain-like (From Topology)H: Kinetochore globular domain-like (From Topology)T: Kinetochore globular domain-likeF: PF09496ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth U]PF20994CENPU protein (CENPU)CENPU protein- Family
N [auth Z]PF09447Cnl2/NKP2 family protein (Cnl2_NKP2)Cnl2/NKP2 family protein- Family
O [auth a]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
P [auth b],
S [auth f]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
Q [auth d]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
R [auth e]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
T [auth g]PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
T [auth g]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
U [auth h]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
V [auth i]PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
V [auth i]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
C [auth H]PF20993CENPH protein (CENPH)CENPH protein- Family
H [auth N]PF05238Kinetochore protein CHL4 like (CENP-N)Kinetochore protein CHL4 like- Family
I [auth O]PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]Inner kinetochore subunit MIF2
J [auth P]Inner kinetochore subunit CTF19-
K [auth Q]Inner kinetochore subunit OKP1-
L [auth U]Inner kinetochore subunit AME1-
M [auth Y]Inner kinetochore subunit NKP1-
N [auth Z]Inner kinetochore subunit NKP2-
O [auth a]Histone H3-like centromeric protein CSE4
P [auth b],
S [auth f]
Histone H4
Q [auth d]Histone H2B.2
R [auth e]Histone H3-like centromeric protein CSE4
T [auth g]Histone H2A.1
B [auth G]DNA (125-MER)---
U [auth h]Histone H2B.1
V [auth i]Histone H2A.1
C [auth H]Inner kinetochore subunit MCM16-
D [auth I]Inner kinetochore subunit CTF3-
E [auth J]DNA (125-MER)---
F [auth K]Inner kinetochore subunit MCM22-
G [auth L]Inner kinetochore subunit IML3-
H [auth N]Inner kinetochore subunit CHL4
I [auth O]Inner kinetochore subunit MCM21-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR025974Mif2/CENP-C cupin domainDomain
A [auth C]IPR028386Centromere protein C/Mif2/cnp3Family
A [auth C]IPR014710RmlC-like jelly roll foldHomologous Superfamily
A [auth C]IPR028929Mif2, N-terminalDomain
L [auth U]IPR048743Inner kinetochore subunit AME1Family
N [auth Z]IPR018565Kinetochore subunit Nkp2/Cnl2Family
O [auth a]IPR009072Histone-foldHomologous Superfamily
O [auth a]IPR007125Histone H2A/H2B/H3Domain
O [auth a]IPR000164Histone H3/CENP-AFamily
P [auth b],
S [auth f]
IPR009072Histone-foldHomologous Superfamily
P [auth b],
S [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
P [auth b],
S [auth f]
IPR001951Histone H4Family
P [auth b],
S [auth f]
IPR019809Histone H4, conserved siteConserved Site
Q [auth d]IPR009072Histone-foldHomologous Superfamily
Q [auth d]IPR007125Histone H2A/H2B/H3Domain
Q [auth d]IPR000558Histone H2BFamily
R [auth e]IPR009072Histone-foldHomologous Superfamily
R [auth e]IPR007125Histone H2A/H2B/H3Domain
R [auth e]IPR000164Histone H3/CENP-AFamily
T [auth g]IPR009072Histone-foldHomologous Superfamily
T [auth g]IPR007125Histone H2A/H2B/H3Domain
T [auth g]IPR002119Histone H2AFamily
T [auth g]IPR032454Histone H2A, C-terminal domainDomain
T [auth g]IPR032458Histone H2A conserved siteConserved Site
U [auth h]IPR009072Histone-foldHomologous Superfamily
U [auth h]IPR007125Histone H2A/H2B/H3Domain
U [auth h]IPR000558Histone H2BFamily
V [auth i]IPR009072Histone-foldHomologous Superfamily
V [auth i]IPR007125Histone H2A/H2B/H3Domain
V [auth i]IPR002119Histone H2AFamily
V [auth i]IPR032454Histone H2A, C-terminal domainDomain
V [auth i]IPR032458Histone H2A conserved siteConserved Site
C [auth H]IPR048744Inner kinetochore subunit MCM16Family
H [auth N]IPR007902Centromere protein Chl4/mis15/CENP-NFamily
I [auth O]IPR018464Centromere protein OFamily