6QLD | pdb_00006qld

Structure of inner kinetochore CCAN-Cenp-A complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
V [auth i]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)
U [auth h]SCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
T [auth g]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)
R [auth e]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)
Q [auth d]SCOP2B SuperfamilyCore histone-like 8036590 3001387 SCOP2B (2022-06-29)
S [auth f]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
P [auth b]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
O [auth a]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth O]e6qldO1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: AcrIIA6F:ECOD (20:10:01)
G [auth L]e6qldL1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: AcrIIA6F:ECOD (20:10:01)
V [auth i]e6qldi1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SRP54_NF:ECOD (20:10:01)
U [auth h]e6qldh1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: AcrIIA6F:ECOD (20:10:01)
T [auth g]e6qldg1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: AcrIIA6F:ECOD (20:10:01)
R [auth e]e6qlde1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T:F:ECOD (20:10:01)
Q [auth d]e6qldd1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SRP54_NF:ECOD (20:10:01)
S [auth f]e6qldf1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SRP54_NF:ECOD (20:10:01)
P [auth b]e6qldb1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: AcrIIA6F:ECOD (20:10:01)
O [auth a]e6qlda1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: SRP54_NF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth O]PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family
H [auth N]PF05238Kinetochore protein CHL4 like (CENP-N)Kinetochore protein CHL4 like- Family
C [auth H]PF20993CENPH protein (CENPH)CENPH protein- Family
C [auth H]PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
B [auth G]PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B [auth G]PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
N [auth Z]PF09447Cnl2/NKP2 family protein (Cnl2_NKP2)Cnl2/NKP2 family protein- Family
L [auth U]PF20994CENPU protein (CENPU)CENPU protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth O]Inner kinetochore subunit MCM21-
H [auth N]Inner kinetochore subunit CHL4
G [auth L]Inner kinetochore subunit IML3-
F [auth K]Inner kinetochore subunit MCM22-
E [auth J]DNA (125-MER)---
D [auth I]Inner kinetochore subunit CTF3-
C [auth H]Inner kinetochore subunit MCM16-
V [auth i]Histone H2A.1
U [auth h]Histone H2B.1
B [auth G]DNA (125-MER)---
T [auth g]Histone H2A.1
R [auth e]Histone H3-like centromeric protein CSE4
Q [auth d]Histone H2B.2
P [auth b],
S [auth f]
Histone H4
O [auth a]Histone H3-like centromeric protein CSE4
N [auth Z]Inner kinetochore subunit NKP2-
M [auth Y]Inner kinetochore subunit NKP1-
L [auth U]Inner kinetochore subunit AME1-
K [auth Q]Inner kinetochore subunit OKP1-
J [auth P]Inner kinetochore subunit CTF19-
A [auth C]Inner kinetochore subunit MIF2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth O]IPR018464Centromere protein OFamily
H [auth N]IPR007902Centromere protein Chl4/mis15/CENP-NFamily
C [auth H]IPR048744Inner kinetochore subunit MCM16Family
V [auth i]IPR009072Histone-foldHomologous Superfamily
V [auth i]IPR002119Histone H2AFamily
V [auth i]IPR007125Core Histone H2A/H2B/H3 domainDomain
V [auth i]IPR032454Histone H2A, C-terminal domainDomain
V [auth i]IPR032458Histone H2A conserved siteConserved Site
U [auth h]IPR009072Histone-foldHomologous Superfamily
U [auth h]IPR000558Histone H2BFamily
U [auth h]IPR007125Core Histone H2A/H2B/H3 domainDomain
U [auth h]IPR055333Histone H2B, conserved siteConserved Site
T [auth g]IPR009072Histone-foldHomologous Superfamily
T [auth g]IPR002119Histone H2AFamily
T [auth g]IPR007125Core Histone H2A/H2B/H3 domainDomain
T [auth g]IPR032454Histone H2A, C-terminal domainDomain
T [auth g]IPR032458Histone H2A conserved siteConserved Site
R [auth e]IPR009072Histone-foldHomologous Superfamily
R [auth e]IPR007125Core Histone H2A/H2B/H3 domainDomain
R [auth e]IPR000164Histone H3/CENP-AFamily
Q [auth d]IPR009072Histone-foldHomologous Superfamily
Q [auth d]IPR055333Histone H2B, conserved siteConserved Site
Q [auth d]IPR000558Histone H2BFamily
Q [auth d]IPR007125Core Histone H2A/H2B/H3 domainDomain
P [auth b],
S [auth f]
IPR009072Histone-foldHomologous Superfamily
P [auth b],
S [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
P [auth b],
S [auth f]
IPR001951Histone H4Family
P [auth b],
S [auth f]
IPR019809Histone H4, conserved siteConserved Site
O [auth a]IPR009072Histone-foldHomologous Superfamily
O [auth a]IPR007125Core Histone H2A/H2B/H3 domainDomain
O [auth a]IPR000164Histone H3/CENP-AFamily
N [auth Z]IPR018565Kinetochore subunit Nkp2/Cnl2Family
L [auth U]IPR048743Inner kinetochore subunit AME1Domain
A [auth C]IPR025974Mif2/CENP-C cupin domainDomain
A [auth C]IPR028386Centromere protein C/Mif2/cnp3Family
A [auth C]IPR014710RmlC-like jelly roll foldHomologous Superfamily
A [auth C]IPR028929Mif2, N-terminalDomain