4V6U
Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth AQ] | SCOP2 Family | 40S Ribosomal protein S13, N-terminal domain-like | 8050313 | 4006843 | SCOP2 (2022-06-29) |
A [auth AQ] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8052954 | 4000767 | SCOP2 (2022-06-29) |
A [auth AQ] | SCOP2 Superfamily | Homeodomain-like | 8052955 | 3000001 | SCOP2 (2022-06-29) |
A [auth AQ] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8052956 | 3001284 | SCOP2 (2022-06-29) |
N [auth AM] | SCOP2 Family | Ribosomal protein L18p and S11 | 8100261 | 4000555 | SCOP2 (2022-06-29) |
N [auth AM] | SCOP2 Superfamily | Translational machinery components | 8100262 | 3000571 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048398 | 4001909 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050322 | 4006847 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8052751 | 4004197 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052753 | 3000135 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052752 | 3001473 | SCOP2 (2022-06-29) |
O [auth AE] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052754 | 3000334 | SCOP2 (2022-06-29) |
P [auth AJ] | SCOP2 Family | Ribosomal protein S8e | 8048705 | 4006189 | SCOP2 (2022-06-29) |
P [auth AJ] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053085 | 3000433 | SCOP2 (2022-06-29) |
Q [auth AO] | SCOP2B Superfamily | S13-like H2TH domain | 8100260 | 3000053 | SCOP2B (2022-06-29) |
S [auth AS] | SCOP2 Family | Rps17e-like | 8063509 | 4002889 | SCOP2 (2022-06-29) |
S [auth AS] | SCOP2 Superfamily | Rps17e-like | 8063510 | 3001852 | SCOP2 (2022-06-29) |
B [auth AK] | SCOP2 Family | Translational machinery components | 8082674 | 4000951 | SCOP2 (2022-06-29) |
B [auth AK] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8082675 | 3000100 | SCOP2 (2022-06-29) |
BB [auth BG] | SCOP2B Superfamily | L30e-like | 8033057 | 3001739 | SCOP2B (2022-06-29) |
OB [auth B4] | SCOP2B Superfamily | L30e-like | 8033057 | 3001739 | SCOP2B (2022-06-29) |
T [auth A3] | SCOP2B Superfamily | L30e-like | 8033057 | 3001739 | SCOP2B (2022-06-29) |
V [auth AY] | SCOP2 Family | Ribosomal protein S27a | 8088662 | 4002852 | SCOP2 (2022-06-29) |
V [auth AY] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8088663 | 3001320 | SCOP2 (2022-06-29) |
X [auth AA] | SCOP2 Family | Ribosomal S3Ae | 8048445 | 4006095 | SCOP2 (2022-06-29) |
X [auth AA] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053209 | 3002166 | SCOP2 (2022-06-29) |
Y [auth AH] | SCOP2B Superfamily | Ribosomal protein S7 | 8065991 | 3000799 | SCOP2B (2022-06-29) |
Z [auth AP] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047582 | 4003647 | SCOP2 (2022-06-29) |
Z [auth AP] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052588 | 3000068 | SCOP2 (2022-06-29) |
BA [auth AV] | SCOP2 Family | Ribosomal protein S24e | 8082570 | 4003636 | SCOP2 (2022-06-29) |
BA [auth AV] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082571 | 3000210 | SCOP2 (2022-06-29) |
HB [auth B6] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082571 | 3000210 | SCOP2B (2022-06-29) |
CA [auth AL] | SCOP2B Superfamily | Ribosomal protein S10 | 8098822 | 3001336 | SCOP2B (2022-06-29) |
C [auth AI] | SCOP2 Family | Ribosomal protein S8 | 8079066 | 4002027 | SCOP2 (2022-06-29) |
C [auth AI] | SCOP2 Superfamily | Ribosomal protein S8 | 8079067 | 3000709 | SCOP2 (2022-06-29) |
EA [auth BY] | SCOP2 Family | Ribosomal protein L30p/L7e | 8077496 | 4001360 | SCOP2 (2022-06-29) |
EA [auth BY] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8077497 | 3001378 | SCOP2 (2022-06-29) |
FA [auth BO] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8049680 | 4006591 | SCOP2 (2022-06-29) |
FA [auth BO] | SCOP2 Superfamily | Translational machinery components | 8052874 | 3000571 | SCOP2 (2022-06-29) |
GA [auth BC] | SCOP2 Family | Ribosomal protein L3 | 8078346 | 4002103 | SCOP2 (2022-06-29) |
GA [auth BC] | SCOP2 Superfamily | Translational proteins | 8078347 | 3000811 | SCOP2 (2022-06-29) |
IA [auth BL] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8077120 | 4003555 | SCOP2 (2022-06-29) |
IA [auth BL] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8077121 | 3001045 | SCOP2 (2022-06-29) |
JA [auth Bf] | SCOP2 Family | ribosomal protein l39e | 8100265 | 4001518 | SCOP2 (2022-06-29) |
JA [auth Bf] | SCOP2 Superfamily | Ribosomal protein L39e | 8100266 | 3001756 | SCOP2 (2022-06-29) |
KA [auth BU] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8076745 | 4001752 | SCOP2 (2022-06-29) |
KA [auth BU] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076746 | 3000334 | SCOP2 (2022-06-29) |
LA [auth Bb] | SCOP2 Family | Ribosomal protein L32e | 8100507 | 4003517 | SCOP2 (2022-06-29) |
LA [auth Bb] | SCOP2 Superfamily | Ribosomal protein L32e | 8100508 | 3000982 | SCOP2 (2022-06-29) |
MA [auth Be] | SCOP2 Family | Ribosomal protein L37e | 8100263 | 4003706 | SCOP2 (2022-06-29) |
MA [auth Be] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8100264 | 3001320 | SCOP2 (2022-06-29) |
D [auth AG] | SCOP2 Family | Ribosomal protein S6e | 8048559 | 4006143 | SCOP2 (2022-06-29) |
D [auth AG] | SCOP2 Superfamily | GS N-terminal domain-like | 8053162 | 3000408 | SCOP2 (2022-06-29) |
NA [auth BE] | SCOP2 Family | Ribosomal protein L5 | 8077500 | 4001498 | SCOP2 (2022-06-29) |
NA [auth BE] | SCOP2 Superfamily | RL5-like | 8077501 | 3001709 | SCOP2 (2022-06-29) |
OA [auth Ba] | SCOP2 Family | Ribosomal protein L31e | 8100267 | 4001085 | SCOP2 (2022-06-29) |
OA [auth Ba] | SCOP2 Superfamily | Ribosomal protein L31e | 8100268 | 3000699 | SCOP2 (2022-06-29) |
PA [auth BT] | SCOP2 Family | L23p | 8077076 | 4000943 | SCOP2 (2022-06-29) |
PA [auth BT] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077077 | 3000210 | SCOP2 (2022-06-29) |
RA [auth BW] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8076739 | 4000600 | SCOP2 (2022-06-29) |
RA [auth BW] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8076740 | 3000713 | SCOP2 (2022-06-29) |
SA [auth Bi] | SCOP2 Family | Ribosomal protein L37ae | 8100255 | 4003704 | SCOP2 (2022-06-29) |
SA [auth Bi] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8100256 | 3001320 | SCOP2 (2022-06-29) |
TA [auth BA] | SCOP2 Family | Ribosomal protein L1p/L10e-like | 8065333 | 4002929 | SCOP2 (2022-06-29) |
TA [auth BA] | SCOP2 Superfamily | Ribosomal protein L1p/L10e-like | 8065334 | 3001911 | SCOP2 (2022-06-29) |
UA [auth BI] | SCOP2 Family | Ribosomal protein L13 | 8066050 | 4003623 | SCOP2 (2022-06-29) |
UA [auth BI] | SCOP2 Superfamily | Ribosomal protein L13 | 8066051 | 3001134 | SCOP2 (2022-06-29) |
VA [auth BR] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8077104 | 4001752 | SCOP2 (2022-06-29) |
VA [auth BR] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8077105 | 3000334 | SCOP2 (2022-06-29) |
XA [auth BQ] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8077464 | 4001138 | SCOP2 (2022-06-29) |
XA [auth BQ] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8077465 | 3000890 | SCOP2 (2022-06-29) |
E [auth AW] | SCOP2 Family | Ribosomal protein S27e | 8063781 | 4003887 | SCOP2 (2022-06-29) |
E [auth AW] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8063782 | 3001320 | SCOP2 (2022-06-29) |
ZA [auth Bj] | SCOP2 Family | Ribosomal protein L44e | 8100271 | 4003711 | SCOP2 (2022-06-29) |
ZA [auth Bj] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8100272 | 3001320 | SCOP2 (2022-06-29) |
CB [auth BD] | SCOP2 Family | Ribosomal protein L4 | 8077106 | 4003628 | SCOP2 (2022-06-29) |
CB [auth BD] | SCOP2 Superfamily | Ribosomal protein L4 | 8077107 | 3001146 | SCOP2 (2022-06-29) |
GB [auth BZ] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8063967 | 4001513 | SCOP2 (2022-06-29) |
GB [auth BZ] | SCOP2 Superfamily | L30e-like | 8063968 | 3001739 | SCOP2 (2022-06-29) |
IB [auth BP] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8046511 | 4003555 | SCOP2 (2022-06-29) |
IB [auth BP] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8095969 | 3001045 | SCOP2 (2022-06-29) |
JB [auth BM] | SCOP2 Family | L15e | 8082470 | 4000945 | SCOP2 (2022-06-29) |
JB [auth BM] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082471 | 3000210 | SCOP2 (2022-06-29) |
KB [auth BS] | SCOP2 Family | Ribosomal protein L22 | 8076699 | 4001212 | SCOP2 (2022-06-29) |
KB [auth BS] | SCOP2 Superfamily | Ribosomal protein L22 | 8076700 | 3001078 | SCOP2 (2022-06-29) |
LB [auth Bd] | SCOP2 Family | Ribosomal protein L34e-like | 8048725 | 4006193 | SCOP2 (2022-06-29) |
LB [auth Bd] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8053545 | 3002203 | SCOP2 (2022-06-29) |
MB [auth BN] | SCOP2 Family | Ribosomal protein L10e | 8079408 | 4001135 | SCOP2 (2022-06-29) |
MB [auth BN] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8079409 | 3000884 | SCOP2 (2022-06-29) |
PB [auth Bc] | SCOP2B Superfamily | Translational proteins | 8042350 | 3000811 | SCOP2B (2022-06-29) |
QB [auth BJ] | SCOP2 Family | Ribosomal protein L14 | 8072037 | 4001826 | SCOP2 (2022-06-29) |
QB [auth BJ] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8072038 | 3000433 | SCOP2 (2022-06-29) |
RB [auth Bl] | SCOP2 Family | RplX-like | 8100269 | 4002003 | SCOP2 (2022-06-29) |
RB [auth Bl] | SCOP2 Superfamily | RplX-like | 8100270 | 3000673 | SCOP2 (2022-06-29) |
G [auth AB] | SCOP2 Family | Ribosomal protein S2-like | 8063807 | 4003744 | SCOP2 (2022-06-29) |
G [auth AB] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8063808 | 3001397 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth AQ] | Ribosomal_S13_N_1 | e4v6uAQ1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N_1 | ECOD (1.6) |
A [auth AQ] | Ribosomal_S15_2 | e4v6uAQ2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
J [auth AD] | S4 | e4v6uAD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
L [auth AN] | Ribosom_S12_S23 | e4v6uAN1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
M [auth AX] | Ribosomal_S28e | e4v6uAX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
N [auth AM] | Ribosomal_S11 | e4v6uAM1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
O [auth AE] | UNK_F_TYPE | e4v6uAE2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: UNK_F_TYPE | ECOD (1.6) |
O [auth AE] | KOW_1 | e4v6uAE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: KOW_1 | ECOD (1.6) |
O [auth AE] | RS4NT | e4v6uAE3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
P [auth AJ] | Ribosomal_S8e | e4v6uAJ1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
Q [auth AO] | Ribosomal_S13 | e4v6uAO1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
R [auth AF] | Ribosomal_S5_C | e4v6uAF3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
R [auth AF] | Ribosomal_S5_2 | e4v6uAF2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
S [auth AS] | Ribosomal_S17e | e4v6uAS1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
B [auth AK] | Ribosomal_S9 | e4v6uAK1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
BB [auth BG] | Ribosomal_L7Ae_1 | e4v6uBG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
OB [auth B4] | Ribosomal_L7Ae_1 | e4v6uB41 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
T [auth A3] | Ribosomal_L7Ae_1 | e4v6uA31 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
V [auth AY] | Ribosomal_S27 | e4v6uAY1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
W [auth AT] | Ribosomal_S19 | e4v6uAT1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
X [auth AA] | Ribosomal_S3Ae_N | e4v6uAA1 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
X [auth AA] | Ribosomal_S3Ae_C | e4v6uAA2 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
Y [auth AH] | Ribosomal_S7 | e4v6uAH1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7 | ECOD (1.6) |
Z [auth AP] | Ribosomal_S14_2 | e4v6uAP1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
BA [auth AV] | Ribosomal_S24e | e4v6uAV1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
HB [auth B6] | Ribosomal_S24e | e4v6uB61 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
CA [auth AL] | Ribosomal_S10_1 | e4v6uAL1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
C [auth AI] | Ribosomal_S8_N_1 | e4v6uAI2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
C [auth AI] | Ribosomal_S8_C_1 | e4v6uAI1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
DA [auth AU] | Ribosomal_S19e | e4v6uAU1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
EA [auth BY] | Ribosomal_L30_1 | e4v6uBY1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
FA [auth BO] | Ribosomal_L5e | e4v6uBO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
GA [auth BC] | Ribosomal_L3 | e4v6uBC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
HA [auth B5] | Ribosomal_L14e | e4v6uB51 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
WA [auth BK] | Ribosomal_L14e | e4v6uBK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
IA [auth BL] | Ribosomal_L18 | e4v6uBL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
JA [auth Bf] | Ribosomal_L39 | e4v6uBf1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
KA [auth BU] | Ribosomal_L26 | e4v6uBU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
LA [auth Bb] | Ribosomal_L32e | e4v6uBb1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
MA [auth Be] | Ribosomal_L37e | e4v6uBe1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
D [auth AG] | Ribosomal_S6e | e4v6uAG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
NA [auth BE] | Ribosomal_L5_C | e4v6uBE1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
OA [auth Ba] | Ribosomal_L31e | e4v6uBa1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
PA [auth BT] | Ribosomal_L23_1 | e4v6uBT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_1 | ECOD (1.6) |
QA [auth Bk] | Ribosomal_L10 | e4v6uBk2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
QA [auth Bk] | Ribosomal_P0_L10e | e4v6uBk1 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: Ribosomal_P0_L10e | ECOD (1.6) |
RA [auth BW] | Ribosomal_L29 | e4v6uBW1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
SA [auth Bi] | Ribosomal_L37ae | e4v6uBi1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
TA [auth BA] | Ribosomal_L1_2nd_1 | e4v6uBA2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
TA [auth BA] | Ribosomal_L1_1st_1 | e4v6uBA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
UA [auth BI] | Ribosomal_L13 | e4v6uBI1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
VA [auth BR] | Ribosomal_L21e | e4v6uBR1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
XA [auth BQ] | Ribosomal_L19e_N | e4v6uBQ1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
XA [auth BQ] | Ribosomal_L19e_C | e4v6uBQ2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
E [auth AW] | Ribosomal_S27e | e4v6uAW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
YA [auth BV] | Ribosomal_L24e | e4v6uBV1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
ZA [auth Bj] | Ribosomal_L44 | e4v6uBj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
AB [auth BB] | Ribosomal_L2_1 | e4v6uBB2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
AB [auth BB] | Ribosomal_L2_C_2 | e4v6uBB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
CB [auth BD] | Ribosomal_L4 | e4v6uBD1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
DB [auth BF] | Ribosomal_L6_2 | e4v6uBF2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
DB [auth BF] | Ribosomal_L6 | e4v6uBF1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
EB [auth Bh] | Ribosomal_L41_like | e4v6uBh1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41_like | ECOD (1.6) |
FB [auth BH] | Ribosomal_L11 | e4v6uBH2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
FB [auth BH] | Ribosomal_L11_N | e4v6uBH1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
GB [auth BZ] | Ribosomal_L7Ae | e4v6uBZ1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
IB [auth BP] | Ribosomal_L18 | e4v6uBP1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
JB [auth BM] | Ribosomal_L15e | e4v6uBM1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
F [auth AC] | Ribosomal_S3_C | e4v6uAC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
F [auth AC] | KH_2_2 | e4v6uAC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_2 | ECOD (1.6) |
KB [auth BS] | Ribosomal_L22 | e4v6uBS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
LB [auth Bd] | Ribosomal_L34e | e4v6uBd1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
MB [auth BN] | Ribosomal_L16 | e4v6uBN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
NB [auth Bg] | rpl40e | e4v6uBg1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: rpl40e | ECOD (1.6) |
PB [auth Bc] | Ribosomal_L35Ae | e4v6uBc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
QB [auth BJ] | Ribosomal_L14 | e4v6uBJ1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
RB [auth Bl] | Ribosomal_L18A | e4v6uBl1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
G [auth AB] | Ribosomal_S2_2 | e4v6uAB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
H [auth AR] | Ribosomal_S17_1 | e4v6uAR1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth AQ] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
A [auth AQ] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
J [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
L [auth AN] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
M [auth AX] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
N [auth AM] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
O [auth AE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
O [auth AE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
O [auth AE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
P [auth AJ] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
Q [auth AO] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
R [auth AF] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
R [auth AF] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
S [auth AS] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
B [auth AK] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
BB [auth BG], OB [auth B4], T [auth A3] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
V [auth AY] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
W [auth AT] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
Y [auth AH] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
Z [auth AP] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
BA [auth AV], HB [auth B6] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
CA [auth AL] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
C [auth AI] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
DA [auth AU] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
EA [auth BY] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
FA [auth BO] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
GA [auth BC] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
GA [auth BC] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
HA [auth B5], WA [auth BK] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
IA [auth BL] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
IA [auth BL] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
KA [auth BU] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
KA [auth BU] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
D [auth AG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
NA [auth BE] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
NA [auth BE] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
NA [auth BE] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
PA [auth BT] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
RA [auth BW] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
TA [auth BA] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
TA [auth BA] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
UA [auth BI] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
XA [auth BQ] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
E [auth AW] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
YA [auth BV] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
AB [auth BB] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
AB [auth BB] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
AB [auth BB] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
CB [auth BD] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
CB [auth BD] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
DB [auth BF] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
DB [auth BF] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
FB [auth BH] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
FB [auth BH] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
GB [auth BZ] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
IB [auth BP] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
JB [auth BM] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
F [auth AC] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
F [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
KB [auth BS] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
MB [auth BN] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
QB [auth BJ] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
QB [auth BJ] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
G [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
H [auth AR] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |