4V6U

Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Promiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution.

Armache, J.P.Anger, A.M.Marquez, V.Franckenberg, S.Frohlich, T.Villa, E.Berninghausen, O.Thomm, M.Arnold, G.J.Beckmann, R.Wilson, D.N.

(2013) Nucleic Acids Res. 41: 1284-1293

  • DOI: 10.1093/nar/gks1259
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • In all living cells, protein synthesis occurs on ribonucleoprotein particles called ribosomes. Molecular models have been reported for complete bacterial 70S and eukaryotic 80S ribosomes; however, only molecular models of large 50S subunits have been ...

    In all living cells, protein synthesis occurs on ribonucleoprotein particles called ribosomes. Molecular models have been reported for complete bacterial 70S and eukaryotic 80S ribosomes; however, only molecular models of large 50S subunits have been reported for archaea. Here, we present a complete molecular model for the Pyrococcus furiosus 70S ribosome based on a 6.6 Å cryo-electron microscopy map. Moreover, we have determined cryo-electron microscopy reconstructions of the Euryarchaeota Methanococcus igneus and Thermococcus kodakaraensis 70S ribosomes and Crenarchaeota Staphylothermus marinus 50S subunit. Examination of these structures reveals a surprising promiscuous behavior of archaeal ribosomal proteins: We observe intersubunit promiscuity of S24e and L8e (L7ae), the latter binding to the head of the small subunit, analogous to S12e in eukaryotes. Moreover, L8e and L14e exhibit intrasubunit promiscuity, being present in two copies per archaeal 50S subunit, with the additional binding site of L14e analogous to the related eukaryotic r-protein L27e. Collectively, these findings suggest insights into the evolution of eukaryotic ribosomal proteins through increased copy number and binding site promiscuity.


    Organizational Affiliation

    Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S15P/S13e
AQ
158Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps15
Find proteins for Q8TZD9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZD9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S9P
AK
135Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps9
Find proteins for Q8U0E7 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0E7
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8P
AI
130Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps8
Find proteins for Q8U014 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U014
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S6e
AG
125Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps6e
Find proteins for Q8U3H8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U3H8
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S27e
AW
63Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps27e
Find proteins for Q8U474 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U474
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3P
AC
210Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps3
Find proteins for Q8U004 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U004
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S2P
AB
202Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps2
Find proteins for Q8U0F0 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0F0
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17P
AR
113Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps17
Find proteins for Q8U008 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U008
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
unknown 30S ribosomal protein SX
A9
57N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4P
AD
180Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps4
Find proteins for P61993 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  P61993
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S12P
AN
147Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps12
Find proteins for P61995 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  P61995
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S28e
AX
71Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps28e
Find proteins for Q8U159 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U159
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S11P
AM
137Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps11
Find proteins for Q8U0E3 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0E3
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4e
AE
243Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps4e
Find proteins for Q8U011 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U011
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8e
AJ
127Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps8e
Find proteins for Q8U1Y5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U1Y5
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S13P
AO
148Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps13
Find proteins for Q8U0E2 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0E2
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S5P
AF
236Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps5
Find proteins for Q8U017 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U017
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17e
AS
67Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps17e
Find proteins for Q8U0U1 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0U1
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L7Ae
A3, BG, B4
123Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl7ae
Find proteins for Q8U160 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U160
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S27ae
AY
50Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps27ae
Find proteins for Q8U443 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U443
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S19P
AT
132Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps19
Find proteins for Q8U002 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U002
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3Ae
AA
198Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps3ae
Find proteins for Q8TZE1 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZE1
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S7P
AH
215Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps7
Find proteins for Q8U0M8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0M8
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S14P type Z
AP
56Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps14
Find proteins for Q8U013 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U013
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S24e
AV, B6
99Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps24e
Find proteins for Q8U442 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U442
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S10P
AL
102Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps10
Find proteins for P61885 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  P61885
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
SSU ribosomal protein S19E
AU
150Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rps19e
Find proteins for Q8U0T4 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0T4
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30P
BY
155Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl30
Find proteins for Q9HH78 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q9HH78
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18P
BO
203Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl18
Find proteins for Q9HH80 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q9HH80
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L3P
BC
365Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl3
Find proteins for Q8TZZ8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZZ8
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14e
B5, BK
83Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl14e
Find proteins for Q8U2L5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U2L5
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15P
BL
147Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl15
Find proteins for Q8U018 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U018
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L39e
Bf
51Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl39e
Find proteins for Q8U3S6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U3S6
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24P
BU
121Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl24
Find proteins for Q8U010 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U010
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L32e
Bb
130Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl32e
Find proteins for Q9HH82 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q9HH82
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L37e
Be
62Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl37e
Find proteins for Q8U0P5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0P5
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L5P
BE
186Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl5
Find proteins for Q8U012 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U012
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L31e
Ba
95Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl31e
Find proteins for Q8U3S7 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U3S7
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L23P
BT
86Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl23
Find proteins for Q8U000 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U000
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
Acidic ribosomal protein P0 homolog
Bk
339Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl10 (rplP0)
Find proteins for Q8TZJ8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZJ8
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29P
BW
72Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl29
Find proteins for Q8U005 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U005
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L37Ae
Bi
83Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl37ae
Find proteins for Q8TZI4 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZI4
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L1P
BA
216Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl1
Find proteins for Q8TZJ9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZJ9
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L13P
BI
142Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl13
Find proteins for Q8U0E6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0E6
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21e
BR
97Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl21e
Find proteins for Q8U217 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U217
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L19e
BQ
150Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl19e
Find proteins for Q8U016 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U016
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24e
BV
66Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl24e
Find proteins for Q8U158 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U158
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L44E
Bj
94Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl44e
Find proteins for Q8U475 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U475
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L2P
BB
239Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl2
Find proteins for Q8U001 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U001
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4P
BD
255Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl4
Find proteins for Q8TZZ9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZZ9
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L6P
BF
184Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl6
Find proteins for Q8U015 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U015
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L41e
Bh
24Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl41e
Find proteins for Q8U232 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U232
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L11P
BH
164Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl11
Find proteins for Q8TZK0 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZK0
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30e
BZ
99Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl30e
Find proteins for Q8U0M6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0M6
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18e
BP
120Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl18e
Find proteins for Q8U0E5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0E5
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15e
BM
194Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl15e
Find proteins for Q8U2F9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U2F9
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L22P
BS
155Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl22
Find proteins for Q8U003 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U003
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34e
Bd
89Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl34e
Find proteins for Q8U2L3 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U2L3
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L10e
BN
181Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl10e
Find proteins for Q9UWP5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q9UWP5
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L40e
Bg
51Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl40e
Find proteins for Q8U0V6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U0V6
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L35Ae
Bc
87Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl35ae
Find proteins for Q8TZV6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8TZV6
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14P
BJ
141Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl14
Find proteins for Q8U009 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U009
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein LX
Bl
77Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Mutation(s): 0 
Gene Names: rpl18a (rpl20e, rplX)
Find proteins for Q8U3S9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
Go to UniProtKB:  Q8U3S9
Entity ID: 11
MoleculeChainsLengthOrganism
E-tRNAA177Pyrococcus furiosus DSM 3638
Entity ID: 21
MoleculeChainsLengthOrganism
16S rRNAA21495Pyrococcus furiosus DSM 3638
Entity ID: 27
MoleculeChainsLengthOrganism
P-tRNAA076Pyrococcus furiosus DSM 3638
Entity ID: 67
MoleculeChainsLengthOrganism
23S rRNAB13049Pyrococcus furiosus DSM 3638
Entity ID: 68
MoleculeChainsLengthOrganism
5S rRNAB3126Pyrococcus furiosus DSM 3638
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
A9
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.6 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Other
  • Version 1.2: 2015-04-01
    Type: Other
  • Version 1.3: 2018-07-18
    Type: Data collection