4TWT
Human TNFa dimer in complex with the semi-synthetic bicyclic peptide M21
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TNF | e4twtA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
B | TNF | e4twtB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
E [auth C] | TNF | e4twtC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
F [auth D] | TNF | e4twtD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E [auth C] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
F [auth D] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A, B, E [auth C], F [auth D] | TNFA (Tumor necrosis factor Alpha) | TNF | Homo sapiens (human) | TNF*01 | R-LIKE-DOMAIN TNF (Pr77-233) | RPI | TNF | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, E [auth C], F [auth D] | PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, E [auth C], F [auth D] | IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily |
A, B, E [auth C], F [auth D] | IPR006053 | Tumour necrosis factor | Family |
A, B, E [auth C], F [auth D] | IPR002959 | Tumour necrosis factor alpha | Family |
A, B, E [auth C], F [auth D] | IPR021184 | Tumour necrosis factor, conserved site | Conserved Site |
A, B, E [auth C], F [auth D] | IPR006052 | Tumour necrosis factor domain | Domain |