3FWV

Crystal Structure of a Redesigned TPR Protein, T-MOD(VMY), in Complex with MEEVF Peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00515	e3fwvA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00515	ECOD (1.6)
B	PF00515	e3fwvB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00515	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
B	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13181	Tetratricopeptide repeat (TPR_8)	Tetratricopeptide repeat	-	Repeat
A, B	PF00515	Tetratricopeptide repeat (TPR_1)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hsc70/Hsp90-organizing protein	Hsp90 protein binding protein binding binding heat shock protein binding RNA binding organic cyclic compound binding nucleic acid binding	cellular response to stimulus response to organic substance response to stimulus response to cytokine response to interleukin-7 cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular process cellular response to interleukin-7 cellular response to organic substance	protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol intracellular non-membrane-bounded organelle protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol intracellular non-membrane-bounded organelle dynein axonemal particle non-membrane-bounded organelle nucleus
C, D	Heat shock protein HSP 90-beta	RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding histone deacetylase binding protein binding enzyme binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding histone deacetylase binding protein binding enzyme binding protein-containing complex binding MHC protein complex binding MHC class II protein complex binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding tau protein binding cell adhesion molecule binding cadherin binding enzyme regulator activity molecular function regulator activity nitric-oxide synthase regulator activity protein kinase regulator activity kinase regulator activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding histone methyltransferase binding protein dimerization activity identical protein binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity ATP-dependent protein binding kinase binding unfolded protein binding protein homodimerization activity protein kinase binding TPR domain binding protein domain specific binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity peptide binding DNA polymerase binding disordered domain specific binding	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process metabolic process regulation of nitric oxide metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process regulation of protein stability regulation of biological quality protein stabilization positive regulation of phosphoprotein phosphatase activity protein dephosphorylation regulation of cellular process regulation of phosphatase activity regulation of catalytic activity positive regulation of phosphate metabolic process regulation of primary metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of phosphatase activity positive regulation of macromolecule metabolic process phosphorus metabolic process protein modification process positive regulation of phosphorus metabolic process positive regulation of dephosphorylation regulation of dephosphorylation cellular metabolic process dephosphorylation regulation of protein metabolic process regulation of cellular metabolic process primary metabolic process regulation of molecular function regulation of hydrolase activity macromolecule modification regulation of phosphorus metabolic process macromolecule metabolic process regulation of protein modification process positive regulation of protein metabolic process positive regulation of cellular metabolic process regulation of phosphoprotein phosphatase activity positive regulation of molecular function positive regulation of protein modification process organic substance metabolic process protein metabolic process positive regulation of cellular process organonitrogen compound metabolic process regulation of protein dephosphorylation positive regulation of catalytic activity positive regulation of protein dephosphorylation regulation of macromolecule metabolic process positive regulation of hydrolase activity cellular process ribonucleoprotein complex biogenesis telomerase holoenzyme complex assembly protein-containing complex organization protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis cellular biosynthetic process gene expression macromolecule biosynthetic process protein maturation protein folding organic substance biosynthetic process developmental process placenta development animal organ development anatomical structure development response to organic substance response to stimulus response to topologically incorrect protein response to chemical response to stress response to unfolded protein cellular response to stimulus cellular response to heat cellular response to stress response to heat response to abiotic stimulus response to temperature stimulus positive regulation of phosphorylation regulation of transferase activity positive regulation of tau-protein kinase activity positive regulation of protein phosphorylation protein phosphorylation phosphorylation positive regulation of kinase activity regulation of kinase activity regulation of protein phosphorylation positive regulation of protein kinase activity regulation of tau-protein kinase activity positive regulation of transferase activity regulation of protein kinase activity regulation of phosphorylation response to cytokine response to interleukin-4 cellular response to chemical stimulus cellular response to cytokine stimulus cellular response to interleukin-4 cellular response to organic substance regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation catabolic process negative regulation of proteolysis negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process negative regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process negative regulation of protein catabolic process regulation of proteolysis involved in protein catabolic process regulation of proteolysis modification-dependent macromolecule catabolic process proteolysis negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of ubiquitin-dependent protein catabolic process organonitrogen compound catabolic process negative regulation of catabolic process negative regulation of proteasomal ubiquitin-dependent protein catabolic process negative regulation of metabolic process proteasomal protein catabolic process protein catabolic process regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process negative regulation of proteasomal protein catabolic process regulation of proteasomal protein catabolic process ubiquitin-dependent protein catabolic process organic substance catabolic process regulation of protein catabolic process regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of nucleobase-containing compound metabolic process DNA metabolic process organic cyclic compound metabolic process positive regulation of DNA metabolic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process DNA biosynthetic process regulation of DNA metabolic process regulation of telomerase activity nucleic acid biosynthetic process positive regulation of telomerase activity positive regulation of DNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of cellular biosynthetic process protein localization regulation of localization cellular localization regulation of protein localization positive regulation of protein localization to cell surface localization protein localization to cell surface regulation of cellular localization cellular macromolecule localization macromolecule localization positive regulation of protein localization regulation of protein localization to cell surface supramolecular fiber organization telomere organization RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening telomere maintenance via telomerase chromosome organization telomere maintenance organelle organization chaperone-mediated protein complex assembly positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway positive regulation of signal transduction cellular response to growth factor stimulus signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction cell communication regulation of transforming growth factor beta receptor signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus positive regulation of transforming growth factor beta receptor signaling pathway regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of cellular response to transforming growth factor beta stimulus response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway regulation of cell communication response to growth factor transforming growth factor beta receptor superfamily signaling pathway positive regulation of signaling negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of cyclin-dependent protein kinase activity cell cycle positive regulation of cyclin-dependent protein kinase activity regulation of cell cycle virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction regulation of post-translational protein modification regulation of protein ubiquitination protein ubiquitination regulation of protein modification by small protein conjugation or removal post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol dendrite terminus axon neuron projection plasma membrane bounded cell projection growth cone somatodendritic compartment cell projection distal axon dendritic growth cone dendrite dendritic tree site of polarized growth intracellular organelle intracellular non-membrane-bounded organelle dynein axonemal particle non-membrane-bounded organelle perinuclear region of cytoplasm cell body neuronal cell body mitochondrion intracellular membrane-bounded organelle axonal growth cone pigment granule intracellular vesicle melanosome cytoplasmic vesicle cell surface cell periphery plasma membrane membrane-enclosed lumen ficolin-1-rich granule endomembrane system intracellular organelle lumen organelle lumen ficolin-1-rich granule lumen secretory granule secretory vesicle nucleus nucleoplasm nuclear lumen protein-containing complex HSP90-CDC37 chaperone complex protein folding chaperone complex intracellular protein-containing complex aryl hydrocarbon receptor complex receptor complex vesicle lumen cytoplasmic vesicle lumen secretory granule lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR013105	Tetratricopeptide repeat 2	Repeat
A, B	IPR019734	Tetratricopeptide repeat	Repeat
A, B	IPR041243	STI1/HOP, DP domain	Domain
A, B	IPR006636	Heat shock chaperonin-binding	Domain
C, D	IPR003594	Histidine kinase/HSP90-like ATPase	Domain
C, D	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
C, D	IPR001404	Heat shock protein Hsp90 family	Family
C, D	IPR019805	Heat shock protein Hsp90, conserved site	Conserved Site
C, D	IPR020575	Heat shock protein Hsp90, N-terminal	Domain
C, D	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
C, D	IPR037196	HSP90, C-terminal domain	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P31948	melanoma breast carcinoma dermatomyositis invasive ductal breast carcinoma malignant colon neoplasm non-small cell lung carcinoma vitiligo cutaneous melanoma Gaucher disease lung adenocarcinoma malignant mesothelioma psoriasis depressive disorder hypertensive disorder lung cancer melanoma breast carcinoma dermatomyositis invasive ductal breast carcinoma malignant colon neoplasm non-small cell lung carcinoma vitiligo cutaneous melanoma Gaucher disease lung adenocarcinoma malignant mesothelioma psoriasis depressive disorder hypertensive disorder lung cancer rheumatoid arthritis
C, D	Pharos: P08238	prostate cancer HIV infectious disease ovarian cancer subependymal giant cell astrocytoma breast cancer gastric carcinoma interstitial cystitis large cell medulloblastoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm Prostatic Neoplasms exocrine pancreatic carcinoma interstitial lung disease prostate cancer HIV infectious disease ovarian cancer subependymal giant cell astrocytoma breast cancer gastric carcinoma interstitial cystitis large cell medulloblastoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm Prostatic Neoplasms exocrine pancreatic carcinoma interstitial lung disease lung adenocarcinoma malignant ependymoma myopathy osteosarcoma plasma cell myeloma rheumatoid arthritis gastric cancer invasive ductal breast carcinoma lung cancer malignant glioma non-small cell lung carcinoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.