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Crystal Structure of a Redesigned TPR Protein, T-MOD(VMY), in Complex with MEEVF Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 100 mM Tris pH 8.5, 30% PEG MME 2000, 5-10 mM NiCl2, 10% xylitol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.83 32.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.604 α = 90 b = 66.599 β = 107.21 c = 48.622 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2008-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.6 0.053 5.7 11529
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.8 87.4 0.187
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 33.3 11529 550 98.58 0.187 0.184 0.2037 0.244 0.2636 RANDOM 17.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.17 -0.05 -0.32 2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.065 r_dihedral_angle_3_deg 17.085 r_dihedral_angle_4_deg 15.849 r_dihedral_angle_1_deg 6.011 r_scangle_it 1.897 r_angle_refined_deg 1.227 r_angle_other_deg 1.197 r_scbond_it 1.189 r_mcangle_it 0.639 r_mcbond_it 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.065 r_dihedral_angle_3_deg 17.085 r_dihedral_angle_4_deg 15.849 r_dihedral_angle_1_deg 6.011 r_scangle_it 1.897 r_angle_refined_deg 1.227 r_angle_other_deg 1.197 r_scbond_it 1.189 r_mcangle_it 0.639 r_mcbond_it 0.331 r_mcbond_other 0.076 r_chiral_restr 0.069 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2232 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction