Download MendeleyStructural basis for the broad-spectrum antimicrobial activity of Garvicin Q
Wang, J.W.To be published.
9WJU | pdb_00009wju
Cryo-EM structure of the L. garvieae Man-PTS in complex with the bacteriocin GarQ
- PDB DOI: https://doi.org/10.2210/pdb9WJU/pdb
- EM Map EMD-66030: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Lactococcus garvieae
- Expression System: Lactococcus phage phiL47
- Mutation(s): No
- Deposited: 2025-08-31 Released: 2025-11-12
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.81 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mannose/fructose/sorbose family PTS transporter subunit IIC | A [auth Y], D [auth F], F [auth S] | 267 | Lactococcus garvieae | Mutation(s): 0 Gene Names: ptnC, ikelab_07180, OF801_03270, PWF74_01710, QHR29_06245, SAMN05216438_102202 |  |
UniProt | |||||
Find proteins for A0A1I4FTQ3 (Lactococcus garvieae) Explore A0A1I4FTQ3 Go to UniProtKB: A0A1I4FTQ3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1I4FTQ3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PTS mannose transporter subunit IID | B [auth Z], E [auth G], G [auth T] | 365 | Lactococcus garvieae | Mutation(s): 0 Gene Names: ptnD, ikelab_07170, OF801_03265, PWF74_01705, QHR29_06240 |  |
UniProt | |||||
Find proteins for A0A3D4RH01 (Lactococcus garvieae) Explore A0A3D4RH01 Go to UniProtKB: A0A3D4RH01 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A3D4RH01 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Prepeptide GarQ | C [auth A] | 51 | Lactococcus garvieae | Mutation(s): 0 Gene Names: garQ |  |
UniProt | |||||
Find proteins for H6U5Y1 (Lactococcus garvieae) Explore H6U5Y1 Go to UniProtKB: H6U5Y1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H6U5Y1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MAN Query on MAN | H [auth Z], I [auth G], J [auth T] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.81 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1_4487 |
| RECONSTRUCTION | cryoSPARC |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-11-12 Deposition Author(s): Wang, J.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 32371254 |
| National Natural Science Foundation of China (NSFC) | China | 32171190 |
Revision History (Full details and data files)
- Version 1.0: 2025-11-12
Type: Initial release
