9NJL | pdb_00009njl

MARV GP in complex with MARV16 Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9NJL

This is version 1.1 of the entry. See complete history

Literature

Potent neutralization of Marburg virus by a vaccine-elicited antibody.

Addetia, A.Perruzza, L.Sprouse, K.Park, Y.J.McCallum, M.Stewart, C.Partini, B.Brown, J.T.Donati, A.Culap, K.Balmelli, A.Chawla, B.Kar, S.Gazi, M.Alfson, K.Goez-Gazi, Y.Carrion Jr., R.Corti, D.Benigni, F.Veesler, D.

(2026) Nature 650: 459-469

  • DOI: https://doi.org/10.1038/s41586-025-09868-1
  • Primary Citation Related Structures: 
    9NJL

  • PubMed Abstract: 

    Marburg virus (MARV) is a filovirus that causes severe and often lethal haemorrhagic fever 1,2 . Despite the increasing frequency of MARV outbreaks, no vaccines or therapeutics are licensed for use in humans. Here we designed mutations that improve the expression, thermostability and immunogenicity of the prefusion MARV glycoprotein (GP) ectodomain trimer, which is the sole target of neutralizing antibodies and vaccines in development 3-8 . We discovered a fully human, pan-marburgvirus monoclonal antibody, MARV16, that broadly neutralizes all MARV isolates, Ravn virus and Dehong virus with 40-100-fold increased potency relative to previously described antibodies 9 . Moreover, MARV16 provided therapeutic protection in guinea pigs challenged with MARV. We determined a cryogenic electron microscopy structure of MARV16-bound MARV GP. The structure shows that MARV16 recognizes a prefusion-specific epitope spanning GP1 and GP2, which blocks receptor binding and prevents conformational changes required for viral entry. We further determined the architecture of the MARV GP glycan cap, which shields the receptor-binding site, and identified architectural similarities with distantly related filovirus GPs. MARV16 and previously identified antibodies directed against the receptor-binding site 9-11 simultaneously bound MARV GP. These antibody cocktails required multiple mutations to escape neutralization by both antibodies, a result that paves the way for the development of MARV therapeutics resistant to viral evolution. MARV GP stabilization along with the discovery of MARV16 advance prevention and treatment options for MARV disease.


  • Organizational Affiliation
    • Department of Biochemistry, University of Washington, Seattle, WA, USA.

Macromolecule Content 

  • Total Structure Weight: 307.81 kDa 
  • Atom Count: 11,307 
  • Modeled Residue Count: 1,455 
  • Deposited Residue Count: 2,742 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MARV16 Heavy ChainA [auth H],
E [auth I],
I [auth J]
223Mus musculusMutation(s): 0 
Entity Groups
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Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
MARV16 Light ChainB [auth L],
F [auth N],
J [auth P]
214Mus musculusMutation(s): 0 
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope glycoprotein GP1C [auth A],
G [auth C],
K [auth E]
266Orthomarburgvirus marburgenseMutation(s): 0 
Gene Names: GP
UniProt
Find proteins for P35253 (Lake Victoria marburgvirus (strain Musoke-80))
Explore P35253 
Go to UniProtKB:  P35253
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35253
Glycosylation
Glycosylation Sites: 4
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Envelope glycoprotein GP2D [auth B],
H [auth D],
L [auth F]
211Orthomarburgvirus marburgenseMutation(s): 4 
Gene Names: GP
UniProt
Find proteins for P35253 (Lake Victoria marburgvirus (strain Musoke-80))
Explore P35253 
Go to UniProtKB:  P35253
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35253
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 5
MoleculeChains Length2D Diagram GlycosylationD Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseM [auth G],
O [auth M],
Q
3N-Glycosylation
Glycosylation Resources
GlyTouCan: G15407YE
GlyCosmos: G15407YE
GlyGen: G15407YE
Entity ID: 6
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseN [auth K],
P [auth O],
R
6N-Glycosylation
Glycosylation Resources
GlyTouCan: G56014GC
GlyCosmos: G56014GC
GlyGen: G56014GC

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG

Query on NAG



Download:Ideal Coordinates CCD File
AA [auth E]
S [auth A]
T [auth A]
U [auth A]
V [auth C]
AA [auth E],
S [auth A],
T [auth A],
U [auth A],
V [auth C],
W [auth C],
X [auth C],
Y [auth E],
Z [auth E]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-26
    Type: Initial release
  • Version 1.1: 2026-02-25
    Changes: Data collection, Database references