9HB4 | pdb_00009hb4

Hexameric RuvBL1/RuvBL2 bound to SPAG1 C-ter

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-11-05 Released: 2025-11-19 
  • Deposition Author(s): Santo, P.E., Plisson-Chastang, C.
  • Funding Organization(s): Centre National de la Recherche Scientifique (CNRS), Fundacao para a Ciencia e a Tecnologia, Other government

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

R2TP-like complexes as quaternary chaperones. A comprehensive overview to understand the dynamic R2SP complex

Santo, P.E., Chago, M.E., Ley, M., Gizardin-Fredon, H., Chenuel, T., Desligniere, E., Plassart, L., Paiva, A.C.F., Sousa, P.M.F., Bertrand, E., Charpentier, B., Verheggen, C., Quinternet, M., Meyer, P., Bandeiras, T.M., Cianferani, S., Plisson-Chastang, C., Manival, X.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RuvB-like 1
A, B, C
456Homo sapiensMutation(s): 0 
Gene Names: RUVBL1, INO80H, NMP238, TIP49, TIP49A
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y265 (Homo sapiens)
Explore Q9Y265 
Go to UniProtKB:  Q9Y265
PHAROS:  Q9Y265
GTEx:  ENSG00000175792 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y265
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RuvB-like 2
D, E, F
463Homo sapiensMutation(s): 0 
Gene Names: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y230 (Homo sapiens)
Explore Q9Y230 
Go to UniProtKB:  Q9Y230
PHAROS:  Q9Y230
GTEx:  ENSG00000183207 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y230
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm-associated antigen 1
G, H
926Homo sapiensMutation(s): 0 
Gene Names: SPAG1
UniProt & NIH Common Fund Data Resources
Find proteins for Q07617 (Homo sapiens)
Explore Q07617 
Go to UniProtKB:  Q07617
PHAROS:  Q07617
GTEx:  ENSG00000104450 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07617
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21
RECONSTRUCTIONRELION3.0

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Centre National de la Recherche Scientifique (CNRS)FranceANR-16-CE11-0032-04
Centre National de la Recherche Scientifique (CNRS)FranceANR-23-CE12-0022 YMCR
Centre National de la Recherche Scientifique (CNRS)FranceANR-23-CE44-0035 NAProt-XLMS
Fundacao para a Ciencia e a TecnologiaPortugalUIDB/04462/2020
Fundacao para a Ciencia e a TecnologiaPortugalUIDP/04462/2020
Other governmentProFI - ANR-10-INBS-08-03
Other governmentLS4FUTURE - LA/P/0087/2020

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release