Download MendeleyStructure of western equine encephalitis virus Imperial 181 VLP in complex with house sparrow PCDH10 EC1
Abraham, J., Fan, X., Li, W.To be published.
9DQY | pdb_00009dqy
Structure of western equine encephalitis virus Imperial 181 VLP in complex with house sparrow PCDH10 EC1
- PDB DOI: https://doi.org/10.2210/pdb9DQY/pdb
- EM Map EMD-47118: EMDB EMDataResource
- Classification: VIRUS LIKE PARTICLE
- Organism(s): Western equine encephalitis virus, Passer domesticus
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2024-09-24 Released: 2025-03-26
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), Howard Hughes Medical Institute (HHMI)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.80 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spike glycoprotein E1 | 434 | Western equine encephalitis virus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P13897 (Western equine encephalitis virus) Explore P13897 Go to UniProtKB: P13897 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13897 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Structural polyprotein | 401 | Western equine encephalitis virus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P13897 (Western equine encephalitis virus) Explore P13897 Go to UniProtKB: P13897 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13897 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cadherin domain-containing protein | 103 | Passer domesticus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A8C0UQJ6 (Cyanistes caeruleus) Explore A0A8C0UQJ6 Go to UniProtKB: A0A8C0UQJ6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8C0UQJ6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG (Subject of Investigation/LOI) Query on NAG | J [auth A] K [auth A] L [auth B] M [auth B] N [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.80 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-26 Deposition Author(s): Abraham, J., Fan, X., Li, W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
| Howard Hughes Medical Institute (HHMI) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-03-26
Type: Initial release
