Rotavirus structure
Jenni, S., Herrmann, T., De Sautu, M., Harrison, S.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer capsid glycoprotein VP7 | 326 | Simian rotavirus A strain RRV | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P12476 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore P12476  Go to UniProtKB:  P12476 | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12476 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Inner capsid protein VP2 | C [auth A], D [auth B] | 887 | Simian rotavirus A strain RRV | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for B3F2X3 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X3  Go to UniProtKB:  B3F2X3 | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B3F2X3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Intermediate capsid protein VP6 | 397 | Simian rotavirus A strain RRV | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for B2BN53 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B2BN53  Go to UniProtKB:  B2BN53 | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2BN53 | ||||
Sequence AnnotationsExpand | |||||
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| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | AC [auth Q] CF [auth x] ED [auth W] FC [auth R] HF [auth y] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
| ZN Query on ZN | AB [auth C] AE [auth f] BB [auth D] BE [auth g] CB [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
| CA Query on CA | AD [auth V] AF [auth w] BC [auth Q] BD [auth V] BF [auth w] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
| CL Query on CL | EB [auth F] EE [auth i] JB [auth I] QB [auth N] TB [auth O] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| FME Query on FME | CA [auth f] DA [auth g] E [auth C] EA [auth h] F [auth D] CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O] | L-PEPTIDE LINKING | C6 H11 N O3 S | MET | |
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.21rc1_5127 |
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | R01 CA13202 |