9C1K | pdb_00009c1k

Rhesus rotavirus (empty structure at 2.68 Angstrom resolution)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth B]	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094216	3001935	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth O]	WD40	e9c1kO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P [auth N]	WD40	e9c1kN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O [auth M]	WD40	e9c1kM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N [auth L]	WD40	e9c1kL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M [auth K]	WD40	e9c1kK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L [auth J]	WD40	e9c1kJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K [auth I]	WD40	e9c1kI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J [auth H]	WD40	e9c1kH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I [auth G]	WD40	e9c1kG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth k]	WD40	e9c1kk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H [auth F]	WD40	e9c1kF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth j]	WD40	e9c1kj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G [auth E]	WD40	e9c1kE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth i]	WD40	e9c1ki1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F [auth D]	WD40	e9c1kD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth h]	WD40	e9c1kh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E [auth C]	WD40	e9c1kC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth g]	WD40	e9c1kg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth f]	WD40	e9c1kf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D [auth B]	WD40	e9c1kB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C [auth A]	WD40	e9c1kA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth X]	WD40	e9c1kX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y [auth W]	WD40	e9c1kW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X [auth V]	WD40	e9c1kV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W [auth U]	WD40	e9c1kU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V [auth T]	WD40	e9c1kT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U [auth S]	WD40	e9c1kS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T [auth R]	WD40	e9c1kR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S [auth Q]	WD40	e9c1kQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R [auth P]	WD40	e9c1kP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth y]	WD40	e9c1ky1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth x]	WD40	e9c1kx1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth w]	WD40	e9c1kw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth v]	WD40	e9c1kv1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth u]	WD40	e9c1ku1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth t]	WD40	e9c1kt1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth Z]	WD40	e9c1kZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth 1]	WD40	e9c1k11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth Y]	WD40	e9c1kY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A [auth 0]	WD40	e9c1k01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid
C [auth A], D [auth B]	Inner capsid protein VP2	RNA binding binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
C [auth A], D [auth B]	IPR007779	Rotavirus VP2	Family
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR001963	Glycoprotein VP7	Family
A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], A [auth 0], AA [auth Y], B [auth 1], BA [auth Z], IA [auth t], JA [auth u], KA [auth v], LA [auth w], MA [auth x], NA [auth y], R [auth P], S [auth Q], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], CA [auth f], DA [auth g], E [auth C], EA [auth h], F [auth D], FA [auth i], G [auth E], GA [auth j], H [auth F], HA [auth k], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L], O [auth M], P [auth N], Q [auth O]	FME	Parent Component: MET : AA0021 , AA0566 : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.