9B7F

S_SAD structure of HEWL using lossless default compression

• PDB DOI: https://doi.org/10.2210/pdb9B7F/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Expression System: Gallus gallus
• Mutation(s): No 


• Deposited: 2024-03-27 Released: 2024-04-10 
• Deposition Author(s): Jakoncic, J., Bernstein, H.J., Soares, A.S., Horvat, K.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Department of Energy (DOE, United States)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.198 
• R-Value Work: 0.159 
• R-Value Observed: 0.161 

Literature

Investigation of fast and efficient lossless compression algorithms for macromolecular crystallography experiments

Jakoncic, J., Bernstein, H.J., Soares, A.S., Horvat, K.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.96 kDa 
• Atom Count: 1,214 
• Modelled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL	F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	N [auth A], O [auth A], P [auth A], Q [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.198 
• R-Value Work: 0.159 
• R-Value Observed: 0.161 
• Space Group: P 4₃ 2₁ 2
• Diffraction Data: https://doi.org/10.5281/zenodo.10891770

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.895	α = 90
b = 78.895	β = 90
c = 36.955	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
SHELXDE	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-10 
Deposition Author(s): Jakoncic, J., Bernstein, H.J., Soares, A.S., Horvat, K.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30GM133893
Department of Energy (DOE, United States)	United States	KP1607011

Revision History  

• Version 1.0: 2024-04-10
  Type: Initial release