9YA0 | pdb_00009ya0

Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Toxoplasma gondii
  • Mutation(s): No 

  • Deposited: 2025-09-15 Released: 2025-11-19 
  • Deposition Author(s): Zeng, J., Zhang, R.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.54 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Atomic models of the Toxoplasma cell invasion machinery.

Zeng, J.Fu, Y.Qian, P.Huang, W.Niu, Q.Beatty, W.L.Brown, A.Sibley, L.D.Zhang, R.

(2025) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-025-01728-w
  • Primary Citation of Related Structures:  
    9Y9Z, 9YA0, 9YA1, 9YA2, 9YA3

  • PubMed Abstract: 

    Apicomplexan parasites, responsible for toxoplasmosis, cryptosporidiosis and malaria, invade host cells through a unique gliding motility mechanism powered by actomyosin motors and a dynamic organelle called the conoid. Here, using cryo-electron microscopy, we determined structures of four essential complexes of the Toxoplasma gondii conoid: the preconoidal P2 ring, tubulin-based conoid fibers, and the subpellicular and intraconoidal microtubules. Our analysis identified 40 distinct conoid proteins, several of which are essential for parasite lytic growth, as revealed through genetic disruption studies. Comparative analysis of the tubulin-containing complexes sheds light on their functional specialization by microtubule-associated proteins, while the structure of the preconoidal ring pinpoints the site of actin polymerization and initial translocation, enhancing our mechanistic understanding of gliding motility and, therefore, parasite invasion.


  • Organizational Affiliation
    • Department of Biochemistry, Washington University in St. Louis, School of Medicine, St. Louis, MO, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PCR5, TGME49_2423201,073Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A125YZK2 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore A0A125YZK2 
Go to UniProtKB:  A0A125YZK2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A125YZK2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PCR4, TGME49_201220603Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A7J6K7R7 (Toxoplasma gondii)
Explore A0A7J6K7R7 
Go to UniProtKB:  A0A7J6K7R7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J6K7R7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Formin 15,051Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for D0V3Y0 (Toxoplasma gondii)
Explore D0V3Y0 
Go to UniProtKB:  D0V3Y0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD0V3Y0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
PCR11, TGME49_209490505Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A151HGZ3 (Toxoplasma gondii TgCatPRC2)
Explore A0A151HGZ3 
Go to UniProtKB:  A0A151HGZ3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A151HGZ3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
CGP, TGME49_240380EA,
FA [auth EB],
GA [auth EC]
4,956Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8F7I2 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8F7I2 
Go to UniProtKB:  S8F7I2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8F7I2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
FLM1, TGME49_2717802,777Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8F1N8 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8F1N8 
Go to UniProtKB:  S8F1N8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8F1N8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Transport protein Sec241,019Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A7J6JV06 (Toxoplasma gondii)
Explore A0A7J6JV06 
Go to UniProtKB:  A0A7J6JV06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J6JV06
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Protein transport protein SEC23791Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A125YTJ1 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore A0A125YTJ1 
Go to UniProtKB:  A0A125YTJ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A125YTJ1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
FLM2, TGME49_285990AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
1,192Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8GR55 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8GR55 
Go to UniProtKB:  S8GR55
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8GR55
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
PCR12, TGME49_292170DB [auth IA],
EB [auth IB],
FB [auth IC]
1,599Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8F0I2 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8F0I2 
Go to UniProtKB:  S8F0I2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8F0I2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
PCR10, TGME49_298010GB [auth JA],
HB [auth JB],
IB [auth JC]
2,316Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8FEI7 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8FEI7 
Go to UniProtKB:  S8FEI7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8FEI7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
PCR14, TGME49_311880728Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A125YI95 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore A0A125YI95 
Go to UniProtKB:  A0A125YI95
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A125YI95
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
ICAP16, TGME49_2021201,322Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8GEJ5 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8GEJ5 
Go to UniProtKB:  S8GEJ5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8GEJ5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
PCR12, TGME49_2190702,736Toxoplasma gondiiMutation(s): 0 
EC: 2.7.11.12
UniProt
Find proteins for S8EN17 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8EN17 
Go to UniProtKB:  S8EN17
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8EN17
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
myosin L, TGME49_291020RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
2,484Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8F3J9 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8F3J9 
Go to UniProtKB:  S8F3J9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8F3J9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
PCR13, TGME49_284620VC [auth OA],
WC [auth OB],
XC [auth OC]
2,333Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8FB83 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8FB83 
Go to UniProtKB:  S8FB83
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8FB83
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
PCR15, TGME49_232560AD [auth PC],
YC [auth PA],
ZC [auth PB]
1,822Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for S8GK29 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Explore S8GK29 
Go to UniProtKB:  S8GK29
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS8GK29
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
MLC4, TGME49_294390BD [auth QA],
CD [auth QB],
DD [auth QC],
ED [auth QD]
172Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A7J6KI07 (Toxoplasma gondii)
Explore A0A7J6KI07 
Go to UniProtKB:  A0A7J6KI07
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J6KI07
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
CalmodulinFD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
179Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A7J6JTN7 (Toxoplasma gondii)
Explore A0A7J6JTN7 
Go to UniProtKB:  A0A7J6JTN7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J6JTN7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
CalmodulinJD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
149Toxoplasma gondiiMutation(s): 0 
UniProt
Find proteins for A0A7J6JVC7 (Toxoplasma gondii)
Explore A0A7J6JVC7 
Go to UniProtKB:  A0A7J6JVC7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J6JVC7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.54 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI179885

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release
  • Version 1.1: 2025-12-03
    Changes: Data collection, Database references
  • Version 1.2: 2025-12-17
    Changes: Data collection, Database references
  • Version 1.3: 2025-12-24
    Changes: Data collection, Database references