9YA0 | pdb_00009ya0

Cryo-EM structure of pre-conoid ring 2 (PCR P2 ring)from Toxoplasma gondii


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00643B-box zinc finger (zf-B_box)B-box zinc fingerDomain
PF00643B-box zinc finger (zf-B_box)B-box zinc fingerDomain
PF13374Tetratricopeptide repeat (TPR_10)Tetratricopeptide repeat- Repeat
EA,
FA [auth EB],
GA [auth EC]
PF12807Translation initiation factor eIF3 subunit 135 (eIF3_p135)Translation initiation factor eIF3 subunit 135- Family
PF00630Filamin/ABP280 repeat (Filamin)Filamin/ABP280 repeatDomain
PF04815Sec23/Sec24 helical domain (Sec23_helical)Sec23/Sec24 helical domainCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices.
Domain
PF00626Gelsolin repeat (Gelsolin)Gelsolin repeatDomain
PF08033Sec23/Sec24 beta-sandwich domain (Sec23_BS)Sec23/Sec24 beta-sandwich domainDomain
PF04811Sec23/Sec24 trunk domain (Sec23_trunk)Sec23/Sec24 trunk domainCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.
Domain
PF04810Sec23/Sec24 zinc finger (zf-Sec23_Sec24)Sec23/Sec24 zinc fingerCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain.
Domain
PF04815Sec23/Sec24 helical domain (Sec23_helical)Sec23/Sec24 helical domainCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices.
Domain
PF00626Gelsolin repeat (Gelsolin)Gelsolin repeatDomain
PF08033Sec23/Sec24 beta-sandwich domain (Sec23_BS)Sec23/Sec24 beta-sandwich domainDomain
PF04811Sec23/Sec24 trunk domain (Sec23_trunk)Sec23/Sec24 trunk domainCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.
Domain
PF04810Sec23/Sec24 zinc finger (zf-Sec23_Sec24)Sec23/Sec24 zinc fingerCOPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ...COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain.
Domain
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
PF00630Filamin/ABP280 repeat (Filamin)Filamin/ABP280 repeatDomain
DB [auth IA],
EB [auth IB],
FB [auth IC]
PF13637Ankyrin repeats (many copies) (Ank_4)Ankyrin repeats (many copies)- Repeat
GB [auth JA],
HB [auth JB],
IB [auth JC]
PF12807Translation initiation factor eIF3 subunit 135 (eIF3_p135)Translation initiation factor eIF3 subunit 135- Family
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
PF13833EF-hand domain pair (EF-hand_8)EF-hand domain pairDomain
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
PF13202EF hand (EF-hand_5)EF handDomain
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PCR5, TGME49_242320 - -
PCR4, TGME49_201220 - -
Formin 1- - -
PCR11, TGME49_209490- - -
EA,
FA [auth EB],
GA [auth EC]
CGP, TGME49_240380- - -
FLM1, TGME49_271780- - -
Transport protein Sec24
Protein transport protein SEC23
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
FLM2, TGME49_285990 -
DB [auth IA],
EB [auth IB],
FB [auth IC]
PCR12, TGME49_292170 -
GB [auth JA],
HB [auth JB],
IB [auth JC]
PCR10, TGME49_298010- - -
PCR14, TGME49_311880- - -
ICAP16, TGME49_202120- - -
PCR12, TGME49_219070 -
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
myosin L, TGME49_291020
VC [auth OA],
WC [auth OB],
XC [auth OC]
PCR13, TGME49_284620- - -
AD [auth PC],
YC [auth PA],
ZC [auth PB]
PCR15, TGME49_232560- - -
BD [auth QA],
CD [auth QB],
DD [auth QC],
ED [auth QD]
MLC4, TGME49_294390- - -
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
Calmodulin -
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
Calmodulin -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000315B-box-type zinc fingerDomain
IPR049808CONSTANS-like, B-box-type 1 zinc fingerDomain
IPR000315B-box-type zinc fingerDomain
IPR049808CONSTANS-like, B-box-type 1 zinc fingerDomain
IPR042201Formin, FH2 domain superfamilyHomologous Superfamily
IPR051425Formin HomologyFamily
IPR015425Formin, FH2 domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
EA,
FA [auth EB],
GA [auth EC]
IPR033646CLU central domainDomain
EA,
FA [auth EB],
GA [auth EC]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
EA,
FA [auth EB],
GA [auth EC]
IPR025697CLU domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR017868Filamin/ABP280 repeat-likeRepeat
IPR007123Gelsolin-like domainDomain
IPR029006ADF-H/Gelsolin-like domain superfamilyHomologous Superfamily
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR012990Sec23/Sec24, beta-sandwichDomain
IPR006896Sec23/Sec24, trunk domainDomain
IPR050550SEC23/SEC24 family, SEC24 subfamilyFamily
IPR036180Gelsolin-like domain superfamilyHomologous Superfamily
IPR036174Zinc finger, Sec23/Sec24-type superfamilyHomologous Superfamily
IPR006900Sec23/Sec24, helical domainDomain
IPR006895Zinc finger, Sec23/Sec24-typeDomain
IPR007123Gelsolin-like domainDomain
IPR029006ADF-H/Gelsolin-like domain superfamilyHomologous Superfamily
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR012990Sec23/Sec24, beta-sandwichDomain
IPR006896Sec23/Sec24, trunk domainDomain
IPR036180Gelsolin-like domain superfamilyHomologous Superfamily
IPR037364Protein transport protein Sec23Family
IPR036175Sec23/Sec24 helical domain superfamilyHomologous Superfamily
IPR036174Zinc finger, Sec23/Sec24-type superfamilyHomologous Superfamily
IPR006900Sec23/Sec24, helical domainDomain
IPR006895Zinc finger, Sec23/Sec24-typeDomain
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
IPR044801Filamin familyFamily
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
IPR013783Immunoglobulin-like foldHomologous Superfamily
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
IPR014756Immunoglobulin E-setHomologous Superfamily
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
IPR017868Filamin/ABP280 repeat-likeRepeat
AB [auth HB],
BB [auth HC],
CB [auth HD],
ZA [auth HA]
IPR001298Filamin/ABP280 repeatRepeat
DB [auth IA],
EB [auth IB],
FB [auth IC]
IPR002110Ankyrin repeatRepeat
DB [auth IA],
EB [auth IB],
FB [auth IC]
IPR046341SET domain superfamilyHomologous Superfamily
DB [auth IA],
EB [auth IB],
FB [auth IC]
IPR053010SET domain-containing protein SmydA-8Family
DB [auth IA],
EB [auth IB],
FB [auth IC]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
DB [auth IA],
EB [auth IB],
FB [auth IC]
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
GB [auth JA],
HB [auth JB],
IB [auth JC]
IPR027523CLU domain containing proteinFamily
GB [auth JA],
HB [auth JB],
IB [auth JC]
IPR033646CLU central domainDomain
GB [auth JA],
HB [auth JB],
IB [auth JC]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
IPR001849Pleckstrin homology domainDomain
IPR000595Cyclic nucleotide-binding domainDomain
IPR050503cAMP-dependent protein kinase regulatory subunit-likeFamily
IPR014710RmlC-like jelly roll foldHomologous Superfamily
IPR018488Cyclic nucleotide-binding, conserved siteConserved Site
IPR018490Cyclic nucleotide-binding domain superfamilyHomologous Superfamily
IPR002048EF-hand domainDomain
IPR011992EF-hand domain pairHomologous Superfamily
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR036961Kinesin motor domain superfamilyHomologous Superfamily
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR000408Regulator of chromosome condensation, RCC1Repeat
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR001609Myosin head, motor domain-likeDomain
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIHomologous Superfamily
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR000048IQ motif, EF-hand binding siteBinding Site
RC [auth NA],
SC [auth NB],
TC [auth NC],
UC [auth ND]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
VC [auth OA],
WC [auth OB],
XC [auth OC]
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
BD [auth QA],
CD [auth QB],
DD [auth QC],
ED [auth QD]
IPR011992EF-hand domain pairHomologous Superfamily
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
IPR050230Calmodulin/Myosin light chain/Troponin C-likeFamily
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
IPR018247EF-Hand 1, calcium-binding siteBinding Site
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
IPR002048EF-hand domainDomain
FD [auth RA],
GD [auth RB],
HD [auth RC],
ID [auth RD]
IPR011992EF-hand domain pairHomologous Superfamily
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
IPR050230Calmodulin/Myosin light chain/Troponin C-likeFamily
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
IPR018247EF-Hand 1, calcium-binding siteBinding Site
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
IPR002048EF-hand domainDomain
JD [auth SA],
KD [auth SB],
LD [auth SC],
MD [auth SD]
IPR011992EF-hand domain pairHomologous Superfamily