9OT2 | pdb_00009ot2

13PF microtubule symmetry expansion

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Bos taurus
  • Mutation(s): No 

  • Deposited: 2025-05-26 Released: 2025-07-30 
  • Deposition Author(s): Bui, K.H., Legal, T.L.
  • Funding Organization(s): Canadian Institutes of Health Research (CIHR), Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the ciliary tip central pair reveals the unique role of the microtubule-seam binding protein SPEF1.

Legal, T.Joachimiak, E.Parra, M.Peng, W.Tam, A.Black, C.Guha, M.Nguyen, C.A.Ghanaeian, A.Valente-Paterno, M.Brouhard, G.Gaertig, J.Wloga, D.Bui, K.H.

(2025) Curr Biol 35: 3404-3417.e6

  • DOI: https://doi.org/10.1016/j.cub.2025.06.020
  • Primary Citation of Related Structures:  
    9NTM, 9NW3, 9OT2

  • PubMed Abstract: 

    Motile cilia are unique organelles with the ability to move autonomously. The force generated by beating cilia propels cells and moves fluids. The ciliary skeleton is made of peripheral doublet microtubules and a central pair (CP) with a distinct structure at the tip. In this study, we present a high-resolution structure of the CP in the ciliary tip of the ciliate Tetrahymena thermophila and identify several tip proteins that bind and form unique patterns on both microtubules of the tip CP. Two of those proteins that contain tubulin polymerization-promoting protein (TPPP)-like domains, TLP1 and TLP2, bind to high curvature regions of the microtubule. TLP2, which contains two TPPP-like domains, is an unusually long protein that wraps laterally around half a microtubule and forms the bridge between the two microtubules. Moreover, we found that the conserved protein SPEF1 binds to both microtubule seams and crosslinked the two microtubules. In vitro, human SPEF1 binds to the microtubule seam as visualized by cryoelectron tomography and subtomogram averaging. Single-molecule microtubule dynamics assays indicate that SPEF1 stabilizes microtubules in vitro. Together, these data show that the proteins in the tip CP maintain stable microtubule structures and play important roles in maintaining the integrity of the axoneme.


  • Organizational Affiliation
    • Department of Anatomy and Cell Biology, McGill University, 3640 Rue University, Montreal, QC H3A 0C7, Canada.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-1B chain451Bos taurusMutation(s): 0 
EC: 3.6.5
UniProt
Find proteins for P81947 (Bos taurus)
Explore P81947 
Go to UniProtKB:  P81947
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81947
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta chain445Bos taurusMutation(s): 0 
UniProt
Find proteins for E1BJB1 (Bos taurus)
Explore E1BJB1 
Go to UniProtKB:  E1BJB1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1BJB1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT-156354
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2022-04774

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release