9L4J | pdb_00009l4j

Structure of mouse SCMCcore complex contain ZBED3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural assembly of the subcortical maternal complex SCMC

Ou, G.J.Liu, Q.T.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 4 of NACHT, LRR and PYD domains-containing protein 5963Mus musculusMutation(s): 0 
Gene Names: Nlrp5MaterNalp5
UniProt
Find proteins for Q9R1M5 (Mus musculus)
Explore Q9R1M5 
Go to UniProtKB:  Q9R1M5
Entity Groups  
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UniProt GroupQ9R1M5
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transducin-like enhancer protein 6427Mus musculusMutation(s): 0 
Gene Names: Tle6Grg6
UniProt
Find proteins for Q9WVB3 (Mus musculus)
Explore Q9WVB3 
Go to UniProtKB:  Q9WVB3
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UniProt GroupQ9WVB3
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Oocyte-expressed protein homologC [auth D]89Mus musculusMutation(s): 0 
Gene Names: OoepOep19Sddr
UniProt
Find proteins for Q9CWE6 (Mus musculus)
Explore Q9CWE6 
Go to UniProtKB:  Q9CWE6
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UniProt GroupQ9CWE6
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Zinc finger BED domain-containing protein 3D [auth E]56Mus musculusMutation(s): 0 
Gene Names: Zbed3
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D0L1 (Mus musculus)
Explore Q9D0L1 
Go to UniProtKB:  Q9D0L1
IMPC:  MGI:1919364
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UniProt GroupQ9D0L1
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
E
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82401959

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-01
    Type: Initial release