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 9L4J | pdb_00009l4j

Structure of mouse SCMCcore complex contain ZBED3

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth D]PF16005KH-like RNA-binding domain (MOEP19)KH-like RNA-binding domainMOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplas ...MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage [1].
Domain
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth E]Zinc finger BED domain-containing protein 3
C [auth D]Oocyte-expressed protein homolog
Transducin-like enhancer protein 6
Isoform 4 of NACHT, LRR and PYD domains-containing protein 5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth E]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
D [auth E]IPR043471Zinc finger BED domain-containing protein 2/3Family
C [auth D]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
C [auth D]IPR051778KH Domain-Containing Protein 1Family
C [auth D]IPR031952KH-like RNA-binding domainDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR009146Groucho/transducin-like enhancerFamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR007111NACHT nucleoside triphosphataseDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
IPR001611Leucine-rich repeatRepeat
IPR041075NOD1/2, winged helix domainDomain
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily