9HW6 | pdb_00009hw6

Toxoplasma gondii GSK3b bound to LY2090314 and disulphide bonded through the C223 residue


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.260 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.204 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 
    0.207 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural and functional characterization of TgGSK3, a druggable kinase in Toxoplasma gondii.

Diaz-Martin, S.Swale, C.Bellini, V.Dobrescu, I.Wenker, J.Brenier-Pinchart, M.P.Braun, L.Tollec, A.Corrao, C.Coute, Y.Mas, C.Laurent, F.Bowler, M.Hakimi, M.A.Bougdour, A.

(2025) Nat Commun 16: 9765-9765

  • DOI: https://doi.org/10.1038/s41467-025-64701-7
  • Primary Citation of Related Structures:  
    9HVX, 9HW6

  • PubMed Abstract: 

    Toxoplasma gondii and Cryptosporidium species are apicomplexan parasites of significant medical and veterinary importance. Although current therapeutic options for toxoplasmosis and cryptosporidiosis demonstrate notable efficacy, their clinical efficacy is often limited by suboptimal efficacy and frequent adverse effects. Moreover, therapeutic alternatives remain limited or nonexistent, particularly for cryptosporidiosis, for which nitazoxanide is currently the only approved medication to treat diarrhea in adults and children older than 1 year of age. To identify alternative therapeutic options for addressing these health challenges, we performed a phenotypic screening of an FDA-approved drug repurposing library against Toxoplasma. This screening identifies LY2090314 as a potent inhibitor of T. gondii and Cryptosporidium growth in mammalian cells. Through a target deconvolution strategy combining forward genetics, transcriptome sequencing, and computational mutation analysis, we elucidate the parasiticidal mechanism of LY2090314 and demonstrate that TgGSK3 kinase is its primary molecular target. We also report the first X-ray crystal structure of LY2090314 bound to TgGSK3, resolved at 2.1 Å, which reveals an interaction mode characteristic of type I ATP-competitive inhibitors. Furthermore, interactome analysis uncovers functional connections between TgGSK3 and key cytoskeletal and signaling regulators, providing insights into compound's effects. Collectively, these findings validate TgGSK3 as a promising therapeutic target for toxoplasmosis and offer mechanistic insights into apicomplexan GSK3 biology.


  • Organizational Affiliation
    • Institute for Advanced Biosciences (IAB), Team Host-pathogen interactions and immunity to infection, INSERM U1209, CNRS UMR5309, University Grenoble Alpes, Grenoble, France.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative cell-cycle-associated protein kinase GSKA,
C [auth D]
373Toxoplasma gondii RHMutation(s): 0 
Gene Names: TGGT1_265330
EC: 2.7.11.26
UniProt
Find proteins for A0A125YY75 (Toxoplasma gondii (strain ATCC 50853 / GT1))
Explore A0A125YY75 
Go to UniProtKB:  A0A125YY75
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A125YY75
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Putative cell-cycle-associated protein kinase GSKB,
D [auth F]
373Toxoplasma gondii RHMutation(s): 0 
Gene Names: TGGT1_265330
EC: 2.7.11.26
UniProt
Find proteins for A0A125YY75 (Toxoplasma gondii (strain ATCC 50853 / GT1))
Explore A0A125YY75 
Go to UniProtKB:  A0A125YY75
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A125YY75
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.204 (Depositor), 0.204 (DCC) 
  • R-Value Observed: 0.207 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.91α = 90
b = 161.73β = 92.21
c = 83.28γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-21-CE35-0010-01
Agence Nationale de la Recherche (ANR)FranceANR-21-CE15-0002-01
Agence Nationale de la Recherche (ANR)FranceANR-11-LABX-0024
Agence Nationale de la Recherche (ANR)FranceANR-19-CE15-0026
Fondation pour la Recherche Medicale (FRM)FranceEQU202103012571

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release
  • Version 1.1: 2025-11-19
    Changes: Database references
  • Version 1.2: 2025-12-03
    Changes: Derived calculations, Structure summary