9HNG | pdb_00009hng

Structure of A16/G9 (G9 mutant - H44Y) of Vaccinia virus in complex with VHH D07


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.247 (Depositor), 0.253 (DCC) 
  • R-Value Work: 
    0.215 (Depositor), 0.222 (DCC) 
  • R-Value Observed: 
    0.217 (Depositor) 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of poxvirus fusion regulation and anti-A16/G9 antibody-mediated neutralization and protection.

Meola, A.Vernuccio, R.Battini, L.Albericio, G.Delgado, P.Bamford, R.Pokorny, L.Broutin, M.Martinez Leon, A.Gallien, S.Gil, M.Noriega, M.A.Guivel-Benhassine, F.Porrot, F.Postal, J.Buchrieser, J.Hubert, M.Haouz, A.Lafaye, P.Esteban, M.Hub, J.S.Mahevas, M.Chappert, P.Mercer, J.Garcia-Arriaza, J.Schwartz, O.Guardado-Calvo, P.

(2025) Cell 188: 6266

  • DOI: https://doi.org/10.1016/j.cell.2025.07.040
  • Primary Citation of Related Structures:  
    9HBK, 9HL2, 9HLS, 9HNG, 9HPA, 9R09, 9R0B, 9R0J, 9RDH

  • PubMed Abstract: 

    Monkeypox virus (MPXV) is a poxvirus endemic to Central and West Africa with high epidemic potential. Poxviruses enter host cells via a conserved entry-fusion complex (EFC), which mediates viral fusion to the cell membrane. The EFC is a promising therapeutic target, but the absence of structural data has limited the development of fusion-inhibiting treatments. Here, we investigated A16/G9, a subcomplex of the EFC that controls fusion timing. Using cryo-electron microscopy, we showed how A16/G9 interacts with A56/K2, a viral fusion suppressor that prevents superinfection. Immunization with A16/G9 elicited a protective immune response in mice. Using X-ray crystallography, we characterized two neutralizing antibodies and engineered a chimeric antibody that cross-neutralizes several poxviruses more efficiently than 7D11, the most potent antibody targeting the EFC described to date. These findings highlight the potential of A16/G9 as a candidate for subunit vaccines and identify regions of the EFC as targets for antiviral development.


  • Organizational Affiliation
    • Structural biology of infectious diseases G5+ unit, Institut Pasteur, Université Paris Cité, Paris, France.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Virion membrane protein OPG143358Vaccinia virus Western ReserveMutation(s): 0 
Gene Names: OPG143VACWR136A16L
UniProt
Find proteins for P16710 (Vaccinia virus (strain Western Reserve))
Explore P16710 
Go to UniProtKB:  P16710
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16710
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Entry-fusion complex protein OPG094334Vaccinia virus Western ReserveMutation(s): 1 
Gene Names: OPG094VACWR087G9R
UniProt
Find proteins for P07611 (Vaccinia virus (strain Western Reserve))
Explore P07611 
Go to UniProtKB:  P07611
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP07611
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VHH D07C [auth J000]154Vicugna pacosMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.247 (Depositor), 0.253 (DCC) 
  • R-Value Work:  0.215 (Depositor), 0.222 (DCC) 
  • R-Value Observed: 0.217 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.102α = 90
b = 147.467β = 90
c = 183.367γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-22-CE11-0003

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release
  • Version 1.1: 2025-09-10
    Changes: Database references
  • Version 1.2: 2025-11-12
    Changes: Database references