9H9P | pdb_00009h9p

Spokes 12 and 13 of the human gamma-tubulin ring complex in complex with CDK5RAP2 and docked MZT2/GCP2-NHD module


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights into the interplay between microtubule polymerases, gamma-tubulin complexes and their receptors.

Zheng, A.Vermeulen, B.J.A.Wurtz, M.Neuner, A.Lubbehusen, N.Mayer, M.P.Schiebel, E.Pfeffer, S.

(2025) Nat Commun 16: 402-402

  • DOI: https://doi.org/10.1038/s41467-024-55778-7
  • Primary Citation of Related Structures:  
    9H9P, 9H9Q, 9H9R

  • PubMed Abstract: 

    The γ-tubulin ring complex (γ-TuRC) is a structural template for controlled nucleation of microtubules from α/β-tubulin heterodimers. At the cytoplasmic side of the yeast spindle pole body, the CM1-containing receptor protein Spc72 promotes γ-TuRC assembly from seven γ-tubulin small complexes (γ-TuSCs) and recruits the microtubule polymerase Stu2, yet their molecular interplay remains unclear. Here, we determine the cryo-EM structure of the Candida albicans cytoplasmic nucleation unit at 3.6 Å resolution, revealing how the γ-TuRC is assembled and conformationally primed for microtubule nucleation by the dimerised Spc72 CM1 motif. Two coiled-coil regions of Spc72 interact with the conserved C-terminal α-helix of Stu2 and thereby position the α/β-tubulin-binding TOG domains of Stu2 in the vicinity of the microtubule assembly site. Collectively, we reveal the function of CM1 motifs in γ-TuSC oligomerisation and the recruitment of microtubule polymerases to the γ-TuRC.


  • Organizational Affiliation
    • Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), Heidelberg, Germany.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CDK5 regulatory subunit-associated protein 2A,
B [auth G]
1,893Homo sapiensMutation(s): 2 
Gene Names: CDK5RAP2CEP215KIAA1633
UniProt & NIH Common Fund Data Resources
Find proteins for Q96SN8 (Homo sapiens)
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Go to UniProtKB:  Q96SN8
PHAROS:  Q96SN8
GTEx:  ENSG00000136861 
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UniProt GroupQ96SN8
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 6C [auth L]1,819Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RT7 (Homo sapiens)
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PHAROS:  Q96RT7
GTEx:  ENSG00000128159 
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UniProt GroupQ96RT7
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 3 of Gamma-tubulin complex component 2D [auth M]930Homo sapiensMutation(s): 0 
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PHAROS:  Q9BSJ2
GTEx:  ENSG00000130640 
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UniProt GroupQ9BSJ2
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin gamma-1 chainE [auth l],
F [auth m]
451Homo sapiensMutation(s): 0 
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Find proteins for P23258 (Homo sapiens)
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PHAROS:  P23258
GTEx:  ENSG00000131462 
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UniProt GroupP23258
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mitotic-spindle organizing protein 2AG [auth C]158Homo sapiensMutation(s): 0 
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Find proteins for Q6P582 (Homo sapiens)
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PHAROS:  Q6P582
GTEx:  ENSG00000173272 
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UniProt GroupQ6P582
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySchi 295/4-4
German Research Foundation (DFG)GermanyPF 963/1-4
German Research Foundation (DFG)GermanyPF 963/4-1
Other private--
German Research Foundation (DFG)GermanyINST 35/1314-1 FUGG
German Research Foundation (DFG)GermanyINST 35/1134-1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release